Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    27   3.1  
SPAC227.04 |||autophagy C terminal domain family protein|Schizos...    26   5.4  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   7.2  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.2  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   9.5  

>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 573  YKSIASLITAAHHLNSNVSLHRARNRIT 490
            Y  +  L+  A++LN N+ L   R RIT
Sbjct: 1206 YADVIKLVGMANNLNDNLELEEFRTRIT 1233


>SPAC227.04 |||autophagy C terminal domain family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 472 LTLVGPLVSPHEWVPLTPPISAVKKFFF 389
           L+L+ P+++ H W+  +P    V +FFF
Sbjct: 56  LSLMNPMITMHAWIRDSPSFE-VPQFFF 82


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = -1

Query: 176  HFCYLKTLKWMHSVCESCHKTETGIELMMGKN*IKIY 66
            H  Y K L  +  +C  C K  +   ++   N  K+Y
Sbjct: 1418 HNAYNKKLSLLFDICRGCSKLSSSDPVLCKSNSCKVY 1454


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 253 AHSPPSVKWLLEPIDIYNVNAPPILR 330
           A  PPS+K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 515 SDTFEFKWCAAVISEAM-LLYINAGIG 592
           +DT E +W   VIS AM  L IN+ +G
Sbjct: 452 TDTRESRWLPTVISTAMDKLLINSALG 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,387
Number of Sequences: 5004
Number of extensions: 53893
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)