Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531...    29   4.2  
07_03_0942 + 22773678-22773777,22773869-22774022,22774194-227742...    28   5.6  
03_02_0427 + 8367633-8368205,8369318-8369809,8370602-8370817,837...    28   5.6  
07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370     27   9.8  
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337...    27   9.8  
04_04_0287 - 24156285-24156389,24156477-24156596,24156654-241567...    27   9.8  

>07_03_0263 -
           15951011-15951818,15952009-15952526,15952949-15953197,
           15953270-15953857
          Length = 720

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 137 PNASILMFLNNKNETGKNDA*IVILEFYFIFLLLSW 244
           P +  + +LN  NET +N   +   +  F F+LL W
Sbjct: 663 PKSKRVPYLNRHNETSQNVLVVCDFDMRFTFVLLGW 698


>07_03_0942 +
           22773678-22773777,22773869-22774022,22774194-22774265,
           22774353-22774424,22774599-22774667,22774754-22774926,
           22775457-22775629,22775654-22775827,22775987-22776113,
           22776184-22776252,22776432-22776621,22776789-22776921,
           22777091-22777441
          Length = 618

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 339 LSSQYSYNGCPTIKPKQKKNFFTAEIGGVSG 431
           +S ++SY GC    P    N   A IGGV+G
Sbjct: 151 ISVEFSYGGCAYHSPPGASNQRIAVIGGVAG 181


>03_02_0427 +
           8367633-8368205,8369318-8369809,8370602-8370817,
           8371914-8372237,8372991-8373233,8374056-8374250
          Length = 680

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 457 PLVSPHEWVPLTPPISA 407
           PL+SP  WVPL  P SA
Sbjct: 75  PLLSPSSWVPLLDPASA 91


>07_03_0029 - 12614394-12614984,12617973-12618005,12618362-12618370
          Length = 210

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 582 ALIYKSIASLITAAHHLNS-NVSLHRARNRI 493
           ALI K +A +I+ A HL+  N+ L RA+ R+
Sbjct: 68  ALISKDLADVISPAAHLDQYNLKLQRAQQRL 98


>05_03_0359 -
           12929240-12929376,12931379-12933497,12933594-12933773,
           12933905-12934118,12934199-12934551,12934642-12934864,
           12934953-12935230,12935456-12935725,12935817-12935939,
           12936025-12936102,12936351-12936527,12936597-12936686,
           12937010-12937120,12937397-12937585,12937667-12937858,
           12937990-12938076,12938153-12938257,12938340-12938396,
           12938471-12938545,12938647-12938763,12938876-12939000,
           12939082-12939121,12939241-12939291,12939382-12939569,
           12939808-12939901,12939976-12940149,12940242-12940337,
           12940597-12940689,12940794-12940955,12941034-12941240,
           12941356-12941728,12942379-12942436,12943096-12943171,
           12943874-12943941,12944321-12944642
          Length = 2433

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 104 YLFLFYGTTHKPNASILMF 160
           ++F  YGTTH  N +IL+F
Sbjct: 137 FIFSLYGTTHLRNRAILLF 155


>04_04_0287 -
           24156285-24156389,24156477-24156596,24156654-24156740,
           24156905-24157057,24157516-24157635,24157788-24157949,
           24158029-24158247,24158574-24158616,24159147-24159210,
           24159353-24159458,24159585-24159704,24159831-24159911,
           24160008-24160050,24160308-24160369,24160477-24160563,
           24161004-24161050,24161144-24161276,24161419-24161487,
           24161924-24162010,24162317-24162448
          Length = 679

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 194 HHFYQFHFCYLKTLKWMHSVCESCHKTETGIELMMGKN*IKIY 66
           HH+  F    LKT +W   + + C    +G  +++ K+ I ++
Sbjct: 153 HHYKDFWSLDLKTNQWEQILAKGCPSARSGHRMVLYKHKIVLF 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,423
Number of Sequences: 37544
Number of extensions: 331901
Number of successful extensions: 625
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)