Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               28   7.6  
SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40)        28   7.6  

>SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 501

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 324 LEI*VLSSQYSYNGCPTIKPKQKKNFFTA 410
           +EI  +SSQ+  N CPT+  K K  F  A
Sbjct: 360 IEINEISSQFKGNACPTLAHKPKLFFIQA 388


>SB_15908| Best HMM Match : LysR_substrate (HMM E-Value=8.5e-40)
          Length = 296

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 176 HFCYLKTLKWMHSVCESCHKTETGIEL 96
           HF ++  LK  H+  E  H+T+  I L
Sbjct: 12  HFVWVAELKGFHAAAEKAHRTQPAISL 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,410,769
Number of Sequences: 59808
Number of extensions: 389853
Number of successful extensions: 696
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)