Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035645-1|AAH35645.1| 1266|Homo sapiens Similar to RIKEN cDNA 3...    35   0.29 
AY181243-1|AAO27355.1| 1178|Homo sapiens G protein-coupled recep...    35   0.29 

>BC035645-1|AAH35645.1| 1266|Homo sapiens Similar to RIKEN cDNA
           3830613O22 gene protein.
          Length = 1266

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +3

Query: 489 LLSYFWHDAVIHSNLNGVQPL*VRLCFYISMRVLVFMGGIS 611
           ++SY +H ++I  +L     L V LCF+I +  +VF+GGI+
Sbjct: 778 IVSYIYHHSLIRISLKSWHML-VNLCFHIFLTCVVFVGGIT 817


>AY181243-1|AAO27355.1| 1178|Homo sapiens G protein-coupled receptor
           125 protein.
          Length = 1178

 Score = 34.7 bits (76), Expect = 0.29
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +3

Query: 489 LLSYFWHDAVIHSNLNGVQPL*VRLCFYISMRVLVFMGGIS 611
           ++SY +H ++I  +L     L V LCF+I +  +VF+GGI+
Sbjct: 635 IVSYIYHHSLIRISLKSWHML-VNLCFHIFLTCVVFVGGIT 674


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,962,358
Number of Sequences: 237096
Number of extensions: 2003464
Number of successful extensions: 2669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2669
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)