Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 363 RCNYTESLELISQDGW 316
           RCN T +   I  DGW
Sbjct: 363 RCNATGAFSWIGSDGW 378


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 PKQKKNFFTAEIG 419
           P+Q+ N+FT ++G
Sbjct: 215 PEQRLNYFTEDVG 227


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +3

Query: 381 PKQKKNFFTAEIG 419
           P+Q+ N+FT ++G
Sbjct: 215 PEQRLNYFTEDVG 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,954
Number of Sequences: 438
Number of extensions: 3496
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)