Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19370.1 68417.m02852 hypothetical protein                          28   4.7  
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra...    28   6.2  
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra...    28   6.2  
At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar t...    27   8.2  

>At4g19370.1 68417.m02852 hypothetical protein 
          Length = 217

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 146 SILMFLNNKNETGKNDA*-IVILEFYFIFLLLSWVDELTVHLVLSGYLS 289
           +I++F N++  T + D   I  L    + LLLSW + + V L+LS  +S
Sbjct: 68  NIVVFRNHRTRTKREDGYKITDLTLPTVLLLLSWSNFVVVVLILSTAIS 116


>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 459

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 316 PP--ILRYEF*ALSIVTTAAPPLNQNKKKTSSRQK*AGLVVPTRA 444
           PP  +LR  F A +  T  + PLN NKKK S ++K   +  PT A
Sbjct: 19  PPSLVLRRRFCAAT--TACSVPLNGNKKKKSEKEKVIVISGPTGA 61


>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
           transferase 9 (IPT9) identical to tRNA
           isopentenyltransferase (IPT9) [Arabidopsis thaliana]
           GI:14279070
          Length = 463

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 316 PP--ILRYEF*ALSIVTTAAPPLNQNKKKTSSRQK*AGLVVPTRA 444
           PP  +LR  F A +  T  + PLN NKKK S ++K   +  PT A
Sbjct: 19  PPSLVLRRRFCAAT--TACSVPLNGNKKKKSEKEKVIVISGPTGA 61


>At5g57800.1 68418.m07228 CER1 protein, putative (WAX2) similar to
           maize glossy1 homolog GI:2213643 from [Oryza sativa];
           contains Pfam profile PF01598: Sterol desaturase
          Length = 632

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = -3

Query: 339 ELISQDGWCIYIVDVYGLK*PLNTRWTVSSSTQLSNKKIK*NSR 208
           E IS+  WCI+I+ + GLK  ++  W+V ++     + ++ N +
Sbjct: 36  EDISKVLWCIHILIICGLKALVHELWSVFNNMLFVTRTLRINPK 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,294
Number of Sequences: 28952
Number of extensions: 276891
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)