Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0844
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    33   0.039
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.64 
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   1.5  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   5.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   7.8  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 38/151 (25%), Positives = 72/151 (47%)
 Frame = -3

Query: 647 STSGAIHALLT*KSRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFS 468
           ST  ++ ++L+  + S  S S ++   +     +   T++ + +S S  + S +      
Sbjct: 571 STFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTILSSPTP 630

Query: 467 STQSLIDLAATVFFEKSIFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRS 288
           ST SL+  ++++    S   +S + T   +++          TY+   I SS+ L+   S
Sbjct: 631 STSSLMISSSSIISGSSSILSSSISTIPISSS--------LSTYSSSVIPSSSTLVSSSS 682

Query: 287 RLLLANSVRIASSSGKPIAFKSSSWVSPSEA 195
            L++++S  +ASSS  PI   SSS VS   A
Sbjct: 683 SLIVSSS-PVASSSSSPIP-SSSSLVSTYSA 711


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -3

Query: 407 TSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASSSGKPIAF 228
           TS + TSL ++A               ++ SS+ +    S +L ++S    SSS      
Sbjct: 7   TSSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPL 66

Query: 227 KSSSWVSPSEA 195
            SSS+ SP+ +
Sbjct: 67  SSSSFTSPASS 77


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 271 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 366
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 430 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 519
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 467  STQSLIDLAATVFFEKSIFWTSE 399
            STQ+ +D   T FFE  IF+T +
Sbjct: 1123 STQNGLDATETSFFELQIFFTQD 1145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,574
Number of Sequences: 5004
Number of extensions: 55792
Number of successful extensions: 194
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)