Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0844
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 88 5e-18
04_04_0619 + 26652923-26653267,26653440-26654273 70 2e-12
01_01_1152 + 9170628-9171899 70 2e-12
11_02_0011 - 7337618-7338496,7338596-7338991 66 3e-11
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 65 6e-11
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 63 2e-10
11_02_0012 - 7346282-7347136,7347234-7347593 63 2e-10
11_01_0767 + 6438648-6438809,6439146-6440000 62 3e-10
11_01_0750 - 6315126-6315896,6316371-6316784 62 5e-10
11_01_0771 + 6453130-6454488 57 2e-08
11_02_0014 - 7352619-7352918,7353173-7353418 55 6e-08
05_06_0044 - 25150322-25151260 42 5e-04
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 2.0
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 2.7
05_05_0373 - 24478361-24479383 29 3.5
02_01_0384 - 2781362-2782299,2782320-2782428 29 3.5
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 4.7
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 6.2
10_02_0112 + 5385660-5385821,5386337-5386876 28 8.1
01_06_0373 - 28841462-28842850 28 8.1
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 88.2 bits (209), Expect = 5e-18
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 9/169 (5%)
Frame = +1
Query: 139 KSIVLSAFSVLPPLAQLALASDGETHEELLKAIG---FPDDDAIRTE-----FASKSRDL 294
K++ +S S+ LA L + GET ++++ +G P A+ + A S
Sbjct: 32 KNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGPG 91
Query: 295 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 471
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E
Sbjct: 92 DDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFES 151
Query: 472 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV 618
T RIKD + D++ AT AVL NA+YFKG W SKFD R TSD FY+
Sbjct: 152 ATAGRIKDFLPKDAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYL 200
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 70.1 bits (164), Expect = 2e-12
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 1/159 (0%)
Frame = +1
Query: 142 SIVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELK 321
+ + S + LA LA +DGET +LL +G + A ++R+ +L
Sbjct: 21 NFMFSPLGLRAGLALLATGTDGETLRQLLAFLGSQHIHQLNAASAGLLAEMRAWP--QLS 78
Query: 322 MANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNT-VAAKSINDWVEENTNNRIKDL 498
A ++V +L F + + +++DF AA +N ++ + TN R+ +
Sbjct: 79 FAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNT 138
Query: 499 VNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 615
++P + S+T VL NA++FK W KF+ T R F+
Sbjct: 139 ISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFH 177
>01_01_1152 + 9170628-9171899
Length = 423
Score = 69.7 bits (163), Expect = 2e-12
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 2/163 (1%)
Frame = +1
Query: 136 GKSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 312
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 313 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRI 489
A V+V G L FA + + + + DF+ A+ +N +V + T I
Sbjct: 118 SF--ACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLI 175
Query: 490 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV 618
+D++ P+S+ S+T VL NA++FKG WS F T F++
Sbjct: 176 RDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHL 218
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 66.1 bits (154), Expect = 3e-11
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 5/164 (3%)
Frame = +1
Query: 139 KSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDLRSIK 306
K++V S S+ LA +A + G T +ELL +G DD +++R D +
Sbjct: 31 KNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 307 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNN 483
G + A V+ + +L + + + + + +F + + K IN WV + TN
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 484 RIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 615
I +++ S+ TA VLVNAIYFKG WS+ F T+ F+
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFH 194
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 64.9 bits (151), Expect = 6e-11
Identities = 28/64 (43%), Positives = 40/64 (62%)
Frame = +1
Query: 427 KNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDR 606
K A +N WVE+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D
Sbjct: 209 KAAEVASQVNSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDG 268
Query: 607 DFYV 618
+F++
Sbjct: 269 EFHL 272
Score = 61.7 bits (143), Expect = 5e-10
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +1
Query: 451 INDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV 618
+N WV+ T+ IK++ P S++ T VL NA+YFKGAW+ KFD T D +F++
Sbjct: 469 VNSWVDRVTSGLIKNIATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHL 524
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 63.3 bits (147), Expect = 2e-10
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Frame = +1
Query: 442 AKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV- 618
A +N WV+ T+ IK+++ P S+ T VL NA+YFKGAW+ KFD T D +F +
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLL 65
Query: 619 -SKACIAP 639
K+ +AP
Sbjct: 66 DGKSVLAP 73
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 62.9 bits (146), Expect = 2e-10
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 5/168 (2%)
Frame = +1
Query: 127 NNPGKSIVLSAFSVLPPLAQLALASDGETHEELLKAIGFP--DD--DAIRTEFASKSRDL 294
+N +++V S S+ LA +A + G T +EL+ +G DD +++R D
Sbjct: 27 DNSNRNVVFSPVSLYAALALVASGARGTTLDELVALLGAASLDDLEESVRRAVEVGLADE 86
Query: 295 RSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 471
G + A V+ HD E A+ + + + DF + ++ K IN WV +
Sbjct: 87 SESGGPRVSYACGVW-HD-----ERLAL--KPAYRA----ADFQRQPKSSRKKINKWVSK 134
Query: 472 NTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 615
TN I++++ S+ TA VLVNAIYFKG WS+ F T+ F+
Sbjct: 135 ATNKLIREILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFH 182
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 394 FNSDVQNIDFSKNTVAA-KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAW 570
+ +DF + V A K IN WV T N I +++ P+S S T V+ NAIYFKG W
Sbjct: 42 YKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEW 101
Query: 571 SSKFDERLTSDRDF 612
+ FD+ T++R+F
Sbjct: 102 LAPFDKSDTAEREF 115
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 61.7 bits (143), Expect = 5e-10
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 10/165 (6%)
Frame = +1
Query: 151 LSAFSVLPPLAQLALASDGETHEELLKAIGFPDDD----AIRTEFASKS-----RDLRSI 303
+SA +V LA A + G T ++L+A+G A AS+ RD +
Sbjct: 36 VSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRSTS 95
Query: 304 KGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTN 480
G L A V+ L F ++ +V+ S + DF +K A IN WV+++T
Sbjct: 96 GGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTK 155
Query: 481 NRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 615
+ L+ ++ T VL +A+YF+G W + D R T+++ FY
Sbjct: 156 GTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFY 200
>11_01_0771 + 6453130-6454488
Length = 452
Score = 56.8 bits (131), Expect = 2e-08
Identities = 30/86 (34%), Positives = 42/86 (48%)
Frame = +1
Query: 358 LDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAV 537
+D ++ + + V ++ K A K IN W T I D++ P S+ TA V
Sbjct: 146 IDAFILLLDPSMIDQCVLDLVSEKAEEARKQINAWARRATGKLITDVLPPRSVGPETAVV 205
Query: 538 LVNAIYFKGAWSSKFDERLTSDRDFY 615
L NAIYFKG W F+E T + FY
Sbjct: 206 LGNAIYFKGKWDRPFNESDTERKPFY 231
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/57 (43%), Positives = 33/57 (57%)
Frame = +1
Query: 445 KSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 615
K IN+WV + TN I +++ S+ T VLVNAIYFKG WS F T+ F+
Sbjct: 88 KKINEWVSKATNKLIPEILPDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFH 144
>05_06_0044 - 25150322-25151260
Length = 312
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Frame = +1
Query: 334 VYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAKS-INDWVEENTNNRIKDLVN-- 504
V+V +L+ FA + VF + V++ + N AA++ IN+W T +KD+++
Sbjct: 3 VWVDASLRLNPAFADTAASVFKAAVRS---AGNPAAARAEINEWFSSQTGGFVKDILSNS 59
Query: 505 ----PDSLSSATAAV-----LVNAIYFKGAWSSKFDERLTSDRDFYVS 621
D A+ L N++YF W F LT + DF+VS
Sbjct: 60 IDDDDDGSGGGGGAISASVFLANSLYFNAYWDHPFFPHLTEEGDFHVS 107
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 330 VRHFKLNAFN*SKVTAFTREFCSYSIVVREADSFQKLFMGFTIRS 196
VRH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 247 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 372
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>05_05_0373 - 24478361-24479383
Length = 340
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +1
Query: 436 VAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLV 543
VA + +DW E + ++ D V PD+LSS AAV +
Sbjct: 153 VALREPHDWGESTAHAQL-DAVAPDALSSCDAAVFL 187
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 317 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 150
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 265 TEFASKSRDLRSIKGVELKMANKVYVHDG 351
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 305 LIDRRSRLLLANSVRIASSSGK 240
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Frame = +1
Query: 13 ICLFTIAIAAMAAVTNLSNVLKNGNDNF--TARMFTEVVKNNPGKSIVLSAFSVLPPLAQ 186
+CL T+ + + ++ +S++LK G +NF ++ + VV+ P K + +F L +
Sbjct: 43 MCLSTLRYLSSSLLSRVSHLLKVGRNNFRPPPKVDSSVVRIEPRKPLPPVSFKEWDGLVR 102
Query: 187 LALASDGETHEELLK 231
L +T + K
Sbjct: 103 LCFNRKNKTLGAIFK 117
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 148 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 291
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.365
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,418,803
Number of Sequences: 37544
Number of extensions: 346906
Number of successful extensions: 1007
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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