Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0844
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      89   4e-18
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      83   2e-16
SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      70   2e-12
SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   3.6  
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       29   3.6  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.8  
SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_17741| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
 Frame = +1

Query: 142 SIVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRDLRSIKGVELK 321
           ++  S  S++  LA   L + G T  ++ K   FP D   +     ++ +  +  G ++ 
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNASNSDGNQIL 88

Query: 322 MANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAAK-SINDWVEENTNNRIKDL 498
           MAN+++   G ++ E F   S++ F++++  +D+ KN+  A+ ++N WVE+ T ++IK+L
Sbjct: 89  MANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTKDKIKNL 148

Query: 499 VNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDF 612
           +     +  T   LVNA+YFKG+W   F+   T    F
Sbjct: 149 IPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKF 186


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 6/171 (3%)
 Frame = +1

Query: 178 LAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD---LRSIKGV-ELKMANKVYVH 345
           L  + L S G T  ++    G+ + +   T    K      L S  G  E+++ NK++ H
Sbjct: 5   LGLVYLGSRGTTAIQIANIFGWKESEFEETHRTFKQFHEALLTSDLGYGEIQLVNKIWGH 64

Query: 346 DGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSS 522
           D  ++ E F   +R+ ++S++  +DF +K   A K +N WV + T   IK+L+    ++S
Sbjct: 65  DEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIPHGVINS 124

Query: 523 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKACIAP-EVDLYLPKFKI 672
            T  ++VNA+YFKG W  +F E  T    F+V ++  +  EV++   K K+
Sbjct: 125 LTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMKV 175


>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
 Frame = +1

Query: 313 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEENTNNRI 489
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE T  +I
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKI 108

Query: 490 KDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKACIAPEVDLYLPKFK 669
            DL+ P   +  T   LVNAIYFKG W   F +  +   +F  + +    EV++   K K
Sbjct: 109 CDLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSS-NEVEVEMMFQKSK 167

Query: 670 IE 675
            +
Sbjct: 168 FK 169



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
 Frame = +1

Query: 574 SKFDERLTSDR--DFYVSKACIAP-EVDLYLPKFKIETETNLKD 696
           ++F++ LT D+  D + S +   P +V++Y+PKFK+ +E  L +
Sbjct: 204 ARFEQDLTHDKMTDIFNSVSSQRPADVEVYIPKFKMTSEFKLNE 247


>SB_2625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -3

Query: 263 RIASSSGKPIAFKSSSWVSPSEAKAN*ARGG--STENAERT-MLFPGLFFTTSVNILAVK 93
           R   ++  P+  + ++   P+ +KA    GG  ST +A R+ M FP  F+T  +N     
Sbjct: 72  RFECAAPAPLVLRVTTDHGPNTSKATYENGGDISTLSAGRSAMAFPLTFYTRRINEFLCH 131

Query: 92  LSFPFL 75
            + PFL
Sbjct: 132 KTMPFL 137


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +1

Query: 40  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSIVLSAFSVLPPLAQLALASDG 207
           +MAAV   + +L+  +      + + ++KNN  +SI   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 355 KLDENFAVVSRDVFNSDVQNIDFSKNTVAAKSINDW---VEENTNNRIKD 495
           K +E+  + S  +F+ + +N+DFS +     ++ DW   VE    N ++D
Sbjct: 460 KFEEDLRISS--MFSGEGENVDFSTDLYPTGNVEDWLLEVENTMRNSLRD 507


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 38/199 (19%), Positives = 74/199 (37%), Gaps = 3/199 (1%)
 Frame = -3

Query: 608  SRSLVSRSSNLELHAPLK*MALTRTAAVAELSESGLTKSLMRLLVFSSTQSLIDLAATVF 429
            S S+V   +   +  PLK   +  TAA    + + +  ++        T +    AAT  
Sbjct: 1089 SSSMVQAKAASSITTPLKTTVVAVTAAATTTAATTIAAAVTASTASVVTTTATVAAATTT 1148

Query: 428  FEKSIFWTSELKTSLETTAKXXXXXXXX*TYTLFAILSSTPLIDRRSRLLLANSVRIASS 249
             EK+   T+ +  +  T A          T T  A +++      ++  L A  V  A++
Sbjct: 1149 AEKATTTTAAMVKATTTAAAVTASTASVVTKT--ATVAAATTTAEKATTLTAAMVE-ATT 1205

Query: 248  SGKPIAFKSSSWVSPSEAKAN*ARGG---STENAERTMLFPGLFFTTSVNILAVKLSFPF 78
            +   +   ++S V+ +  KA         +T              TT+  I +  ++ P 
Sbjct: 1206 TAAAVTASTASVVTTTAEKATTTTAAMVEATTTEAAVTASTASVVTTTATIASSTITTPS 1265

Query: 77   LSTLERFVTAAIAAMAIVN 21
            LS +     +++   A  N
Sbjct: 1266 LSAISTTTASSVQVSAATN 1284


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 48  CHCRDGDSKQTNDCL 4
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_47299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 25/76 (32%), Positives = 34/76 (44%)
 Frame = +1

Query: 424 SKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSD 603
           S  + A K++ DW+  N   R KD+V P   S   A      I      S  ++E     
Sbjct: 140 SMQSQACKTLKDWLRANP--RYKDIVPP---SDDQAGQRPRPITSSIMTSDMYNEI---- 190

Query: 604 RDFYVSKACIAPEVDL 651
           RD Y++ A  APE DL
Sbjct: 191 RDMYIAAAQRAPENDL 206


>SB_17741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +1

Query: 463 VEENTNNRIK---DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKACI 633
           ++E  +N I+   D  + + ++  T ++L     F G  + K + R  +  +  V  A  
Sbjct: 93  LKEAADNAIRSNDDYTSTELVTEMTLSLLTEI--FNGTKAGKQESRKQTTNEMPVPNALE 150

Query: 634 APEVDLYLPKFKIETETNLK 693
            PEV      F I+ ETNL+
Sbjct: 151 NPEVQPLNEDFSIKVETNLE 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,217,899
Number of Sequences: 59808
Number of extensions: 402076
Number of successful extensions: 1233
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)