Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0844
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.30 
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.52 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.91 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 133 PGKSIVLSAFSVLPPLAQLALASDGET-HEELLKAIGFPDDDAIRTEFASKSR 288
           P K +   AF   PPL + A+    +T    ++KA+ F D     T+ A K++
Sbjct: 406 PSKPMCAEAFQEFPPLGRFAVRDMRQTVAVGVIKAVTFKDAAGKVTKAAEKAQ 458


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 450 RLSCDCILREINILD 406
           +L C+CIL+  NILD
Sbjct: 60  QLYCECILKNFNILD 74


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 690  EIRLRFNFEFGKIQIDFGC 634
            EI+ R + E+GK+ + FGC
Sbjct: 990  EIKRRPDLEYGKVWLFFGC 1008


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 160 MPRGQCFSLDYFSLLR 113
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 160 MPRGQCFSLDYFSLLR 113
           +PRG+ FSL Y  LLR
Sbjct: 91  LPRGELFSLYYPQLLR 106


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 643 LRVLYMLCSRRSHGHWSVARQI*NSML---P*NRW 548
           +R+  ++C     GHWS   Q    ML   P N W
Sbjct: 277 MRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSW 311


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
 Frame = -1

Query: 643 LRVLYMLCSRRSHGHWSVARQI*NSML---P*NRW 548
           +R+  ++C     GHWS   Q    ML   P N W
Sbjct: 245 MRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNSW 279


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 382 SRDVFNSDVQNIDFSKNTVAAKSIND 459
           S ++  +  QNID +KNT+     ND
Sbjct: 410 SMEINQNIAQNIDHAKNTIIDYRNND 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,874
Number of Sequences: 438
Number of extensions: 3768
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)