Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0842
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   191   8e-50
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   190   1e-49
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.6  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    26   3.7  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    26   4.9  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    25   8.6  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   8.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    25   8.6  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   8.6  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  191 bits (465), Expect = 8e-50
 Identities = 88/156 (56%), Positives = 111/156 (71%)
 Frame = +2

Query: 17  PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 196
           P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGV
Sbjct: 8   PALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGV 67

Query: 197 GRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 376
           GR AQ K+FG TQ RWP KS +F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RR
Sbjct: 68  GRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRR 127

Query: 377 RTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 484
           RTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 128 RTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  190 bits (463), Expect = 1e-49
 Identities = 88/156 (56%), Positives = 110/156 (70%)
 Frame = +2

Query: 17  PDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGV 196
           P    K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGV
Sbjct: 8   PALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGV 67

Query: 197 GRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 376
           GR AQ K+FG TQ RWP KS  F   LL+NAE+NA+ K LD+D+L+I H+QVN AP  RR
Sbjct: 68  GRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRR 127

Query: 377 RTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 484
           RTYRAHGR+  Y+SSP HIE+ ++E E+AV +   T
Sbjct: 128 RTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKANDT 163


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 56  NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 169
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 233 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 150
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 319 RGQASHRPHSGKSRALPTQTYIPCSRA---HQPLHVVSLPHRSMS 444
           + Q+     S K RA   +T +  +++   HQ +H +S PH S S
Sbjct: 331 QAQSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 63  VFTLRTHMRPQWQSGRCRSVVL 128
           V+  R  +   W+ GRCR VVL
Sbjct: 248 VYAERCRVECNWRHGRCRQVVL 269


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 409 LH-VVSLPHRSMSQRTRRCCRQGSPY**CPSEEKAFQEKACASKGEDDE 552
           LH ++ LP RS S  T +C  +       P   K  +E   +SKG+D+E
Sbjct: 182 LHSIIKLPDRS-SSFTLQCINESVR----PQSTKVKEEATTSSKGKDEE 225


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +2

Query: 53  SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 160
           +N ++  K+  ETA A+RKM  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 394 RAHQPLHVVSLPHRS 438
           RAH P+H V + HRS
Sbjct: 380 RAHPPIHPVQMVHRS 394


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 8    LGEPDNPAKSCKARGSNLRVHFKNTY 85
            LG PD   KSCK    +L    + TY
Sbjct: 1290 LGAPDTATKSCKENLISLDSEIRQTY 1315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,358,038
Number of Sequences: 5004
Number of extensions: 45817
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)