Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0842
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433...   212   2e-55
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995...   205   2e-53
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    30   1.7  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   2.9  
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580...    27   8.9  

>09_02_0105 -
           4337047-4337079,4337175-4337242,4337323-4337425,
           4337507-4337737,4339307-4339347,4339437-4339473,
           4339603-4339605
          Length = 171

 Score =  212 bits (518), Expect = 2e-55
 Identities = 103/154 (66%), Positives = 121/154 (78%), Gaps = 1/154 (0%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E +NP KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPFRR+ GG
Sbjct: 7   EANNPTKSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGG 66

Query: 194 VGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL 370
           VGR AQAK +    QGRWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A   
Sbjct: 67  VGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQ 126

Query: 371 RRRTYRAHGRINPYMSSPCHIEVCLSEREDAVAR 472
           RRRTYRAHGRINPYMSSPCHIE+ LSE+E+ V +
Sbjct: 127 RRRTYRAHGRINPYMSSPCHIELILSEKEEPVKK 160


>08_02_1361 -
           26398987-26399019,26399320-26399387,26399458-26399560,
           26399658-26399888,26400791-26400826,26400891-26400931,
           26401028-26401064,26401158-26401160
          Length = 183

 Score =  205 bits (501), Expect = 2e-53
 Identities = 106/174 (60%), Positives = 124/174 (71%), Gaps = 13/174 (7%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKNVIEK 157
           EP NP KS KA G +LRVHFK            NT ETA A+RK+PL +A RYL++VI  
Sbjct: 7   EPSNPTKSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAH 66

Query: 158 KECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLV 334
           K+ IPFRR+ GGVGR AQ K   +  QGRWP KSA F+L LL+NAESNAD K LDVD L 
Sbjct: 67  KQAIPFRRYCGGVGRTAQVKSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLF 126

Query: 335 IDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 496
           + HIQVN+A   RRRTYRAHGRINPYMSSPCH+E+ LSE+E+AV +   T  AP
Sbjct: 127 VSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180


>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
            20319770-20319887,20320607-20320676,20320774-20320854,
            20320924-20320959,20321129-20321149,20321586-20321642,
            20321716-20321827,20321905-20322178,20322454-20322556,
            20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 176  RRFNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQ 349
            R  +G V RC           R  K   EF  Q+ + +E  S  + + L +  + I H+ 
Sbjct: 1011 RNLSGRVRRCRMHDIIRLLALR--KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLS 1068

Query: 350  VNRAPCLR 373
             + APCLR
Sbjct: 1069 GSSAPCLR 1076


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
 Frame = +2

Query: 137 LKNVIEKKECIPFRRFNGGVGRCAQAKQ--FGTTQGRWPKKSAEFLLQLLRNAESNAD-- 304
           L N++E  E     R     GR A+  Q     +  RWP ++AE      RN E NA+  
Sbjct: 400 LDNMVEMHETQVDNRLQDEAGRDARFWQPSLDDSLDRWPNETAE---DAERNWEDNAEEL 456

Query: 305 -NKTLDVDRLVIDHIQ 349
            ++T++ D    DH+Q
Sbjct: 457 HSETMEDDAREHDHLQ 472


>06_01_0776 -
           5805555-5805639,5805769-5806008,5806103-5806173,
           5806274-5806627
          Length = 249

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 490 CPSEEKAFQEKACASKGEDDE 552
           C  EE+A  EK C   GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,043
Number of Sequences: 37544
Number of extensions: 346084
Number of successful extensions: 958
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)