Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0842
         (613 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.4  
AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical prote...    23   7.8  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   7.8  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
            polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 242  WPKKSAEFLLQLLRNAESNADNKTLDVDRLVI---DHIQVNRAPCLR 373
            W +   E+L  L + A+ N +  +++  RLVI   D++ V++ P  R
Sbjct: 1641 WNRWHREYLSTLQKRAKWNKNAISIEPGRLVILQEDNVAVSKWPMAR 1687


>AJ439060-6|CAD27757.1|  297|Anopheles gambiae hypothetical protein
           protein.
          Length = 297

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 334 HRPHSGKSRALPTQTYIPCSRAHQPLHVVSLPHRSMSQ 447
           HR  +G+S   P+   +  ++ HQ +    L +R +S+
Sbjct: 195 HRQEAGQSLKGPSNNMLQANKPHQQVDEHELKNRIISK 232


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 118 PSCCSLPQKRD*KERVYSIPSLQRRRWSLC 207
           PS   L   R     VYS+    RRRWSLC
Sbjct: 9   PSGARLSISRGSPTGVYSV----RRRWSLC 34


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 615,462
Number of Sequences: 2352
Number of extensions: 12701
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 59711994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)