Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0842
         (613 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p pro...   278   5e-75
AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,...   278   5e-75
AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,...   278   5e-75
AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,...   278   5e-75
AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,...   278   5e-75
AY094778-1|AAM11131.1|  570|Drosophila melanogaster LD09231p pro...    32   0.70 
AE014297-2310|AAF55387.2|  570|Drosophila melanogaster CG5175-PB...    32   0.70 
AE014297-2309|AAN13733.1|  570|Drosophila melanogaster CG5175-PA...    32   0.70 

>AY060845-1|AAL28393.1|  186|Drosophila melanogaster GM02242p
           protein.
          Length = 186

 Score =  278 bits (681), Expect = 5e-75
 Identities = 129/162 (79%), Positives = 144/162 (88%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E DN AKSCKARG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGG
Sbjct: 7   ESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGG 66

Query: 194 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 373
           VGRCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLR
Sbjct: 67  VGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLR 126

Query: 374 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 499
           RRTYRAHGRINPYMSSPCH+EV L+E+E+ V++   TDD PA
Sbjct: 127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166


>AE014298-945|AAN09183.1|  186|Drosophila melanogaster CG3203-PD,
           isoform D protein.
          Length = 186

 Score =  278 bits (681), Expect = 5e-75
 Identities = 129/162 (79%), Positives = 144/162 (88%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E DN AKSCKARG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGG
Sbjct: 7   ESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGG 66

Query: 194 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 373
           VGRCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLR
Sbjct: 67  VGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLR 126

Query: 374 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 499
           RRTYRAHGRINPYMSSPCH+EV L+E+E+ V++   TDD PA
Sbjct: 127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166


>AE014298-944|AAF46194.1|  186|Drosophila melanogaster CG3203-PC,
           isoform C protein.
          Length = 186

 Score =  278 bits (681), Expect = 5e-75
 Identities = 129/162 (79%), Positives = 144/162 (88%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E DN AKSCKARG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGG
Sbjct: 7   ESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGG 66

Query: 194 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 373
           VGRCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLR
Sbjct: 67  VGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLR 126

Query: 374 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 499
           RRTYRAHGRINPYMSSPCH+EV L+E+E+ V++   TDD PA
Sbjct: 127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166


>AE014298-943|AAN09182.1|  186|Drosophila melanogaster CG3203-PB,
           isoform B protein.
          Length = 186

 Score =  278 bits (681), Expect = 5e-75
 Identities = 129/162 (79%), Positives = 144/162 (88%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E DN AKSCKARG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGG
Sbjct: 7   ESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGG 66

Query: 194 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 373
           VGRCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLR
Sbjct: 67  VGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLR 126

Query: 374 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 499
           RRTYRAHGRINPYMSSPCH+EV L+E+E+ V++   TDD PA
Sbjct: 127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166


>AE014298-942|AAF46195.1|  186|Drosophila melanogaster CG3203-PA,
           isoform A protein.
          Length = 186

 Score =  278 bits (681), Expect = 5e-75
 Identities = 129/162 (79%), Positives = 144/162 (88%)
 Frame = +2

Query: 14  EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
           E DN AKSCKARG NLRVHFKNT+ETA AI++MPLRRA RYLK VI++KEC+PFRRFNGG
Sbjct: 7   ESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGG 66

Query: 194 VGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLR 373
           VGRCAQAKQ+ TTQGRWPKKSAEFLLQLLRNAE+NAD K LD DRLV+ HIQVNRA CLR
Sbjct: 67  VGRCAQAKQWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLR 126

Query: 374 RRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPA 499
           RRTYRAHGRINPYMSSPCH+EV L+E+E+ V++   TDD PA
Sbjct: 127 RRTYRAHGRINPYMSSPCHVEVILTEKEELVSKA--TDDEPA 166


>AY094778-1|AAM11131.1|  570|Drosophila melanogaster LD09231p
           protein.
          Length = 570

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 256 RRIPLAVIEER*IKR*QQNFGRGQASHRPHSGKSRALPTQTYIPCSRAHQP 408
           RR+PL++     + R QQ+ G    S+ P +G  +   T++++P  +++QP
Sbjct: 23  RRLPLSLSGGSTVTRLQQSSGSNGRSNSPQNGNKKI--TESFLPVKKSNQP 71


>AE014297-2310|AAF55387.2|  570|Drosophila melanogaster CG5175-PB,
           isoform B protein.
          Length = 570

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 256 RRIPLAVIEER*IKR*QQNFGRGQASHRPHSGKSRALPTQTYIPCSRAHQP 408
           RR+PL++     + R QQ+ G    S+ P +G  +   T++++P  +++QP
Sbjct: 23  RRLPLSLSGGSTVTRLQQSSGSNGRSNSPQNGNKKI--TESFLPVKKSNQP 71


>AE014297-2309|AAN13733.1|  570|Drosophila melanogaster CG5175-PA,
           isoform A protein.
          Length = 570

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 256 RRIPLAVIEER*IKR*QQNFGRGQASHRPHSGKSRALPTQTYIPCSRAHQP 408
           RR+PL++     + R QQ+ G    S+ P +G  +   T++++P  +++QP
Sbjct: 23  RRLPLSLSGGSTVTRLQQSSGSNGRSNSPQNGNKKI--TESFLPVKKSNQP 71


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,835,445
Number of Sequences: 53049
Number of extensions: 562673
Number of successful extensions: 1705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)