Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0842
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi... 217 5e-57
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi... 216 8e-57
At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containi... 29 2.4
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ... 28 4.2
At5g18420.1 68418.m02168 expressed protein non-consensus GC dono... 28 4.2
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila... 27 7.4
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 9.8
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to... 27 9.8
At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 fac... 27 9.8
At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 fac... 27 9.8
>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
to ribosomal protein GI:19101 from [Hordeum vulgare]
Length = 175
Score = 217 bits (530), Expect = 5e-57
Identities = 107/158 (67%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Frame = +2
Query: 14 EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
EPDN KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF G
Sbjct: 7 EPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRG 66
Query: 194 VGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL 370
VGR AQAK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A
Sbjct: 67 VGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQ 126
Query: 371 RRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 484
RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V + T
Sbjct: 127 RRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164
>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
to GB:P51413 from [Arabidopsis thaliana]; similar to
ESTs gb|L33542 and gb|AA660016
Length = 176
Score = 216 bits (528), Expect = 8e-57
Identities = 106/158 (67%), Positives = 124/158 (78%), Gaps = 1/158 (0%)
Frame = +2
Query: 14 EPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGG 193
EPDN KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPF RF G
Sbjct: 7 EPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRG 66
Query: 194 VGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCL 370
VGR AQAK + QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A
Sbjct: 67 VGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQ 126
Query: 371 RRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPT 484
RRRTYRAHGRINPYMS+PCHIE+ LSE+E+ V + T
Sbjct: 127 RRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPET 164
>At5g21990.1 68418.m02557 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 554
Score = 29.1 bits (62), Expect = 2.4
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 1/103 (0%)
Frame = +2
Query: 2 VTLGEPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRR 181
VT GE P+K + K + A+R P A+R +N I K +
Sbjct: 250 VTSGENKKPSKEANGHAQGV----KTDVDGLQALRDNP--EAIRTFQNFISKTDPDTLAA 303
Query: 182 FNGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAES-NADN 307
+GG F T K S E + ++++ A S DN
Sbjct: 304 LSGGKAGDMSPDMFKTASSMIGKMSPEEIQKMVQTASSFKGDN 346
>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 449
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 257 RISWASDPVLCQTALLEHSD 198
R+SWASD +LCQ L D
Sbjct: 9 RVSWASDSMLCQVKLFLSDD 28
>At5g18420.1 68418.m02168 expressed protein non-consensus GC donor
splice site at exon 1, unknown (C40) protein, Homo
sapiens, EMBL:AF103798
Length = 441
Score = 28.3 bits (60), Expect = 4.2
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Frame = +2
Query: 77 NTYETAMAIRKMPLR--RAVRYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTTQGRWPK 250
N Y A+ M L V L +E + + C AKQ Q R +
Sbjct: 333 NDYYEALGNMDMSLHSMEVVNRLTTAVELPKDFIRMYITNCISSCENAKQDKYMQNRLVR 392
Query: 251 KSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRR 376
FL L+RN N + ++V I+ +V A L R
Sbjct: 393 LVCVFLQSLIRNKIINVKDLFIEVQAFCIEFSRVREAAGLFR 434
>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
to nodule inception protein GI:6448579 from (Lotus
japonicus); contains Pfam profile: PF02042 RWP-RK domain
Length = 974
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 225 AQHRVAGPRNPPNSSCSY 278
AQ A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.1 bits (57), Expect = 9.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Frame = +1
Query: 163 VYSIPSLQRRRWSLCSS 213
V SIPSL RR W L SS
Sbjct: 43 VVSIPSLSRRSWRLASS 59
>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
myosin heavy chain [Arabidopsis thaliana]
gi|602328|emb|CAA84067.
Length = 1242
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 18 RITLRNHAKRVVQTSVFTLRTHMRPQWQSGRCRSVVLFVTSKT*LKRKSVFH 173
++ L N A+ V S F L + +SG R L + S+ L + SV H
Sbjct: 888 KVELSNRAEEAVDMS-FVLHSEQSDDAESGHGRKAKLSIESEDGLDKSSVLH 938
>At1g76890.2 68414.m08948 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 575
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 230 TQGRWPKKSAEFLLQLLRNAESN 298
+ RWPK E L+++ +N E+N
Sbjct: 394 SSSRWPKTEVEALIRIRKNLEAN 416
>At1g76890.1 68414.m08947 trihelix DNA-binding protein / GT-2 factor
(GT2) identical to GT2 factor [Arabidopsis thaliana]
GI:416490, GI:2664202 (DNA binding factor GT-2 from
Arabidopsis)
Length = 498
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 230 TQGRWPKKSAEFLLQLLRNAESN 298
+ RWPK E L+++ +N E+N
Sbjct: 317 SSSRWPKTEVEALIRIRKNLEAN 339
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,294
Number of Sequences: 28952
Number of extensions: 258566
Number of successful extensions: 654
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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