Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0839
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.3  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.6  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   9.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 2   QQSSQSQPHLPA----VHPADQRTRLWQPSPSPSVLSYPNSTISY 124
           ++S Q Q + P      H ++  + +  PSPS S L+Y +   S+
Sbjct: 240 KESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSF 284


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 458 WSYLHFGMFSTKVLFFTFSTCCVKMF 535
           W  +   M    VL FT+++ C++++
Sbjct: 206 WYSISVFMVPLVVLIFTYTSICIEIW 231


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +1

Query: 13  PKPTSPARGAPCRPTNEALATFPFPFCSLLPKFN 114
           P P      +P  P    +A  P+P  S+ P  N
Sbjct: 324 PSPVPGHSTSPNLPLTHNIAHNPYPSHSIYPSSN 357


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,804
Number of Sequences: 336
Number of extensions: 3533
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)