Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0838
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    23   3.4  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    22   4.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  

>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 711 CYKVFAMKEAS*SIFDILVVQEVAIGT 631
           CYK F    A  + F +  + E A+GT
Sbjct: 168 CYKPFVNVNAHVAQFTLKTIAETAMGT 194



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 157 YQTYCFGTRREHVFS 201
           Y  YC+ T ++H++S
Sbjct: 18  YLFYCYKTIKQHIYS 32


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 711 CYKVFAMKEAS*SIFDILVVQEVAIGT 631
           CYK F    A  + F +  + E A+GT
Sbjct: 168 CYKPFINVNAHVAQFTLKTIAETAMGT 194



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 157 YQTYCFGTRREHVFS 201
           Y  YC+ T ++H++S
Sbjct: 18  YLFYCYKTIKQHIYS 32


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 476 PPHPFHRP 453
           PPHP H+P
Sbjct: 738 PPHPHHQP 745


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 476 PPHPFHRP 453
           PPHP H+P
Sbjct: 630 PPHPHHQP 637


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,560
Number of Sequences: 336
Number of extensions: 3119
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)