Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0838
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.6  
SPBC1105.18c ||SPBC887.21c|peptide release factor|Schizosaccharo...    27   2.1  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.5  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   6.5  
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa...    25   8.6  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   8.6  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 IQSHSKINHIKLTVSGQDASTCFHLDAVSPAS 226
           ++ H+K  H K T S QDA+   HL + SP S
Sbjct: 665 LKRHAKKLHEKKTKSSQDATIDHHLTSHSPES 696


>SPBC1105.18c ||SPBC887.21c|peptide release
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1

Query: 378 AFYCGAILRARHVNFCVDLKTKRTLNCLSQSDFLETLI 265
           AF C A L  RH  +C   +T   L  L + D  ET I
Sbjct: 20  AFSCLAELNFRHTWYCSKKETPYQLERLQEEDIEETFI 57


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 16/63 (25%), Positives = 27/63 (42%)
 Frame = +2

Query: 500 NRAALCIELIDRARPQRDAVLLLCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKIDQ 679
           N  +   E +DR +   + V L C   FT+T    S+  S     P  T+ ++ +S +  
Sbjct: 102 NPTSTVTEYVDRVQTVTEYVTLSCGQAFTSTVDISSSTSSSVINSPTGTAVSSQISTLSM 161

Query: 680 DAS 688
             S
Sbjct: 162 SPS 164


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 28/109 (25%), Positives = 44/109 (40%)
 Frame = +2

Query: 365 PQ*KAARQLRRRHDALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARP 544
           PQ   +  L +R+D  +++    T  ++RRGD   + +  S P R R       +D  RP
Sbjct: 72  PQSSRSHLLSQRNDLFLDSSSQRTPRSTRRGDIHSSVQ-MSTPSRRRE------VDPQRP 124

Query: 545 QRDAVLLLCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKIDQDASF 691
                  L  S   A   S +   S      +   W T++S  +  ASF
Sbjct: 125 GVSTPSSLLFSGSDALTFSQAHPSSEVADDTVRVIWGTNVSIQESIASF 173


>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 165 SLIWFILECDWISDVEQPVSLYCACY 88
           +L W ++  D    V+Q +SL+C+ Y
Sbjct: 45  NLAWALVRSDSTQHVQQGLSLFCSIY 70


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +2

Query: 404 DALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVLLL 568
           D  V+++R   +   R+  EK   E +    +NRAAL I+++  +   +D  LLL
Sbjct: 152 DPFVSSQRLRKQFRERKKIEKKQ-EAKDLSLKNRAALDIDILPPSSSDKDKALLL 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,965
Number of Sequences: 5004
Number of extensions: 50342
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)