Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0838
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin...    29   3.5  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    29   4.6  

>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
            protein protein16, isoform d protein.
          Length = 1030

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/113 (23%), Positives = 49/113 (43%)
 Frame = +2

Query: 383  RQLRRRHDALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVL 562
            R++ RR+ ++ + R DS          +   + R PPQ +RAA  I L  +  PQ     
Sbjct: 868  REMSRRN-SVASTRIDSPSLMIPH-HRQSRSDSRGPPQMSRAASSIPLSPQPTPQH---- 921

Query: 563  LLCHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSKIDQDASFIANTL*QQYR 721
               H H  + RP+       ++ +  AT+ + +    D+  +++   L   YR
Sbjct: 922  ---HHHHHSQRPTTPGATRARNYIARATAPSPTPYSYDRARAYVPPALPPGYR 971


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 398 RHDALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQR 550
           RHD+    RRDS+  +S      D  E R   +   ++     +++ RP+R
Sbjct: 495 RHDSRSRRRRDSSSSSSMSSSSSDEDERRRKRREKESSKKRRSVEKERPRR 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,250,689
Number of Sequences: 27780
Number of extensions: 299643
Number of successful extensions: 701
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)