Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0838
         (744 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17180.1 68417.m02584 glycosyl hydrolase family 17 protein si...    29   4.3  
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ...    28   7.5  
At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22) ...    27   9.9  
At4g19490.2 68417.m02867 expressed protein                             27   9.9  
At4g19490.1 68417.m02866 expressed protein                             27   9.9  
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   9.9  
At1g49580.1 68414.m05559 calcium-dependent protein kinase, putat...    27   9.9  

>At4g17180.1 68417.m02584 glycosyl hydrolase family 17 protein
           similar to 3-glucanase GI:18483232 from [Sorghum
           bicolor]
          Length = 475

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -1

Query: 336 FCVDLKTKRTLNCLSQSDFLETLINIQYE*SDWCVQQEAGDTASR*KHVLASCPE 172
           F  D + K  LN    +  L+   N+QY  S WCV   + D      H+  +C E
Sbjct: 327 FSFDGQAKYRLNLGLGNRGLKNAKNVQYLPSRWCVAHPSRDMTQVGDHLRLACSE 381


>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
           protein / snRNP family protein contains similarity to
           U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
           sapiens] gi|2708307|gb|AAC51926
          Length = 786

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +2

Query: 347 RARSIAPQ*KAARQLRRRHDALVNA-RRDSTEC-ASRRGDEKDAGE*RSPPQRNRA 508
           R R  +P     R+  RR D  V++ RRDS    +SRRGD +D  + R+  +R R+
Sbjct: 14  RDRDSSPDHSPQREGGRRRDRDVDSKRRDSDHYRSSRRGDREDERD-RTKDRRGRS 68


>At5g10790.1 68418.m01254 ubiquitin-specific protease 22 (UBP22)
           almost identical to ubiquitin-specific protease 22
           GI:11993484 [Arabidopsis thaliana], one amino acid
           difference
          Length = 557

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 159 IWFILECDWISDVEQPVSLYCACY 88
           +W+  +  WI++VE+ V   C CY
Sbjct: 501 LWYRCDDAWINEVEEEVVRGCECY 524


>At4g19490.2 68417.m02867 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 166 YCFGTRREHVFSP*CSVSSLLLNAPVTLLILNVNQSFQEVALRKT 300
           YCF   R+HV S   S++S L     T++IL     F  +++  T
Sbjct: 308 YCFRHLRDHVTSSIDSINSELFRENFTIIIL--TSEFMRISIHDT 350


>At4g19490.1 68417.m02866 expressed protein
          Length = 1054

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 166 YCFGTRREHVFSP*CSVSSLLLNAPVTLLILNVNQSFQEVALRKT 300
           YCF   R+HV S   S++S L     T++IL     F  +++  T
Sbjct: 308 YCFRHLRDHVTSSIDSINSELFRENFTIIIL--TSEFMRISIHDT 350


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 487 PPAAKPCCPLHRAHRPRSPSTRCRAAAVPLSLYR 588
           PPA +   P   A R RSPS   R    P  LYR
Sbjct: 364 PPARRRRSPSPPARRRRSPSPPARRRRSPSPLYR 397


>At1g49580.1 68414.m05559 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium/calmodulin-dependent
           protein kinase CaMK3 [Nicotiana tabacum]
           gi|16904226|gb|AAL30820; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 606

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +1

Query: 436 RVRKQTGR*KGCGGIEEPPAAKPCCPLHRAHRPRSPSTRCRAA 564
           R R+   R  G GG  +   + P   L RA  P SP+   RAA
Sbjct: 61  RHRRNKSRDVGGGGESKSLTSTPLRQLRRAFHPPSPAKHIRAA 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,162,332
Number of Sequences: 28952
Number of extensions: 269446
Number of successful extensions: 614
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)