Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0837
(497 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 8e-26
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0) 29 1.6
SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059) 29 2.8
SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15) 28 4.9
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19) 27 6.5
SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4) 27 6.5
SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 113 bits (272), Expect = 8e-26
Identities = 57/92 (61%), Positives = 67/92 (72%)
Frame = +1
Query: 220 LVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIR 399
+VRDLRGK + +AY S+F+RHLCEPG D F+DGVPREGL RQ VLTRIGVMSLIR
Sbjct: 1386 VVRDLRGKGRKAVQAYSSMFLRHLCEPGYDGGSQFSDGVPREGLHRQQVLTRIGVMSLIR 1445
Query: 400 KKVQEFEHINGYYSMPELVRKPVEPVKVSGAS 495
KKV+EF ING + +L P+EP S AS
Sbjct: 1446 KKVEEFAPING-WDCSKLESTPLEPRGPSRAS 1476
>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1626
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = -3
Query: 492 RPRHFHRLNWFSH-QFRHAVVPVD-VFE 415
+P+H++R+NWF H + +PVD VF+
Sbjct: 1308 KPKHYNRVNWFDHVHADNEEIPVDRVFQ 1335
>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 893
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 14 RMIMEICSVAGVSVASKSERNATDRCLHYWPESAATWKF 130
+MI E S + + + ER +C YWPE TW F
Sbjct: 486 QMIWEQESTLVIMLTTTMERGRV-KCHQYWPEGEDTWTF 523
>SB_2885| Best HMM Match : Ras (HMM E-Value=0.0059)
Length = 141
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 212 ELKASCGGIPYRMIALRND 156
ELK +C G+PY +I +ND
Sbjct: 4 ELKEACPGVPYLLIGCKND 22
>SB_35285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 28.3 bits (60), Expect = 3.7
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = +1
Query: 115 GNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLC 294
G +LGF+ + KS + + G+ QD+ N + S +FK + + C
Sbjct: 110 GRPHILGFSLEELKSRIEILEASGINGQDSLNIATAIPSHLDFSAHSFKDIIEILQDLKC 169
Query: 295 EPGADNAET-FADGVPREG-LSRQHVLTRIGVMSLI 396
+ F G+ E L+ + L ++G+MS +
Sbjct: 170 NVAEIVIKAPFIFGMDSERLLNNVNRLRKVGIMSQV 205
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 33 AQSPE*ASPRKARGTRPTAASITGQSRRQHGSSRLQRQAEE 155
++SP+ +SP++ G R T+ + +RQ RLQR A +
Sbjct: 184 SKSPKKSSPKRKSGKRKTSLKFS-HKKRQKAWKRLQRAATD 223
>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
Length = 631
Score = 27.9 bits (59), Expect = 4.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 279 HAPSLRTGRRQRGNICGRRSEGRIIPSARFDTNRGNE 389
H+P R G GN+CG++++ AR + G++
Sbjct: 289 HSPDSRIGFGAMGNLCGQKNDNSAGNEARCSPDNGDK 325
>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
Length = 1204
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = -1
Query: 332 PSANVSALSAPGSQRWRMNKDT*ALKLRSDF-PR----RSLTNHCELKASCG-GIPYRMI 171
PSA V LS+PGSQ KD L+ ++ + PR S+T C+L+ + PY +
Sbjct: 483 PSA-VRNLSSPGSQVVSKGKDVAKLQAQAGYTPRSSTATSITASCKLQTTLATSAPYHSV 541
Query: 170 ALRNDFL 150
L++ +
Sbjct: 542 PLQSSVM 548
>SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4)
Length = 424
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 233 CAGSLSATSRPTCPCSCAISANRAPT 310
CA +S ++ PT PC+ +S + PT
Sbjct: 48 CASHVSISTTPTGPCASHVSISTTPT 73
>SB_42380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1430
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 320 VSALSAPGSQRWR-MNKDT*ALKLRSDFPRRSLTNHCEL 207
VSAL + G Q WR + +D A SDF + +H +L
Sbjct: 81 VSALGSCGVQEWRIIKRDNPAADYPSDFSLLRIVDHSQL 119
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 233 CAGSLSATSRPTCPCSCAISANRAPT 310
CA +S ++ PT PC+ +S + PT
Sbjct: 554 CASHVSISTTPTGPCASHVSISTTPT 579
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,533
Number of Sequences: 59808
Number of extensions: 324118
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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