Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0837
         (497 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL...    76   2e-14
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s...    58   3e-09
At4g35900.1 68417.m05099 DNA-binding protein-related weak simila...    29   2.3  
At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containi...    28   3.0  
At1g05070.1 68414.m00509 expressed protein                             27   5.3  
At2g40070.1 68415.m04923 expressed protein                             27   7.0  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   7.0  
At5g49170.1 68418.m06086 expressed protein similar to unknown pr...    27   9.3  
At5g25600.1 68418.m03046 hypothetical protein low similarity to ...    27   9.3  
At5g22980.1 68418.m02686 serine carboxypeptidase III, putative s...    27   9.3  
At2g34590.1 68415.m04250 transketolase family protein similar to...    27   9.3  

>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
            identical to chromatin remodeling factor CHD3
            [Arabidopsis thaliana] GI:6478518
          Length = 1384

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
 Frame = +1

Query: 112  GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
            G +  VLGFN  QR  F+  +MRYG     A N  W   V  L+ K+      Y  LF++
Sbjct: 945  GRSFRVLGFNQSQRAIFVQTLMRYG-----AGNFDWKEFVPRLKQKTFEEINEYGILFLK 999

Query: 286  HLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELV 456
            H+ E   +N+ TF+DGVP+EGL  + VL RI ++ L+++KV+  E   G    P  +
Sbjct: 1000 HIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRI 1056


>At4g31900.1 68417.m04533 chromatin remodeling factor, putative strong
            similarity to chromatin remodeling factor CHD3 (PICKLE)
            [Arabidopsis thaliana] GI:6478518; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 1202

 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
 Frame = +1

Query: 112  GGNMEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQW--LVRDLRGKSERNFKAYVSLFMR 285
            G  + VLGFN  +R  FL    RYG     A N  W   V  L  K+      Y  LF++
Sbjct: 881  GRYLMVLGFNETERDIFLRTFKRYG-----AGNFDWKEFVNPLYMKTYDEINKYGILFLK 935

Query: 286  HLCEPGADNAETF--------ADGVPREGLSRQHVLTRIGVMSLIRKKVQ 411
            H+ E   DN+  F        ADGVP+EG+S   +L  +  M L+++K Q
Sbjct: 936  HIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEKCQ 985


>At4g35900.1 68417.m05099 DNA-binding protein-related weak
           similarity to DNA-binding factor gmlip15 [Zea mays]
           GI:14289167
          Length = 245

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 348 IIPSARFDTNRGNEFDQEKGSGIRTHQRVLQH 443
           ++PS+ F   RG   D  +GSG R H+R++++
Sbjct: 195 LVPSSSFGKKRGQ--DSNEGSGNRRHKRMIKN 224


>At3g14950.1 68416.m01891 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|Q99615 DnaJ homolog
           subfamily C member 7 (Tetratricopeptide repeat protein
           2) {Homo sapiens}; contains Pfam profile PF00515: TPR
           Domain
          Length = 721

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 186 DAAAGRFQLAVVSERSAREV*AQLQGLRVLVHAPSLRTGRRQRGN 320
           + A GRF+ AVV+   A ++  Q   + +L     L T  R RGN
Sbjct: 460 ELALGRFENAVVTAEKASKIDPQNNEVEILYKNVRLITRARDRGN 504


>At1g05070.1 68414.m00509 expressed protein
          Length = 184

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 242 SLSATSRPTCPCSCAISANRAPTTRKHLRTA 334
           ++SA+S P+CPC C  S   A T  K L  A
Sbjct: 38  AVSASSCPSCPCEC--STYSAVTIPKELSNA 66


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 236 AGSLSATSRPTCPCSCAISANRAPTTR 316
           A S + TSRPT P S  IS +  PT R
Sbjct: 293 ARSSTPTSRPTLPPSKTISRSSTPTRR 319


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +1

Query: 268 VSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKV 408
           +++ MR + E  A  AE+  D   R+G   +H+L    + +  R++V
Sbjct: 663 IAVIMRTIAEEDAIAAESMRDAALRDGALLRHLLNAFSLPASERREV 709


>At5g49170.1 68418.m06086 expressed protein similar to unknown
           protein (gb|AAF63814.1)
          Length = 185

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 112 RLWPVMEAAVGRVPLAFRGDAYSGD*ADLHY 20
           R WP+  A VGR      GD    D +D+H+
Sbjct: 88  RKWPISSAVVGRCSGENDGDNEFDDRSDVHF 118


>At5g25600.1 68418.m03046 hypothetical protein low similarity to
           zinc finger protein [Arabidopsis thaliana] GI:976277
          Length = 331

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = -1

Query: 287 WRMNKDT*ALKLRSDFPRRSLTNHCELKASCGGIPYRMIALRNDFLCLALKPRTSM 120
           W  N+    L+   DFPR     + +L     GIP  +  +   F+   L P T +
Sbjct: 97  WLFNQWFVPLQRWEDFPRADFLTYIDLWVQVRGIPLYVSTMTVRFIASTLGPVTGL 152


>At5g22980.1 68418.m02686 serine carboxypeptidase III, putative
           similar to serine carboxypeptidase III from Oryza sativa
           SP|P37891, Matricaria chamomilla GI:6960455, Hordeum
           vulgare SP|P21529, Triticum aestivum SP|P11515; contains
           Pfam profile PF0450 serine carboxypeptidase
          Length = 505

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 406 VQEFEHINGYYSMP 447
           VQEF H  GYYS+P
Sbjct: 93  VQEFGHYAGYYSLP 106


>At2g34590.1 68415.m04250 transketolase family protein similar to
           SP|O66113 Pyruvate dehydrogenase E1 component, beta
           subunit (EC 1.2.4.1). {Zymomonas mobilis}; contains Pfam
           profiles PF02779: Transketolase, pyridine binding
           domain, PF02780: Transketolase, C-terminal domain
          Length = 406

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 51  ASPRKARGTRPTAASITGQSRRQHGSSRLQRQAEEVIPQCYHAVRDAAA 197
           A  R +   R     + G   +  GSS + R++E +IP       D AA
Sbjct: 27  APSRSSLSVRSKRYIVAGSDSKSFGSSLVARRSEPLIPNAVTTKADTAA 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,662,823
Number of Sequences: 28952
Number of extensions: 218393
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)