Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0836
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 319 2e-88
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 319 2e-88
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 177 1e-45
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 72 9e-14
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 8e-05
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.27
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 30 0.36
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.62
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.62
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 1.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.3
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 3.3
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.3
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 4.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.4
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 4.4
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 4.4
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 5.8
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 7.7
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 319 bits (784), Expect = 2e-88
Identities = 149/216 (68%), Positives = 171/216 (79%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
LKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESV 567
Query: 182 AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
+E S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DV
Sbjct: 568 SEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDV 627
Query: 362 TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
T+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFN
Sbjct: 628 TDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFN 687
Query: 542 IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPV 649
I DV LH DAIHRGGGQIIPT RR +YA L A P+
Sbjct: 688 ILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPI 723
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 319 bits (784), Expect = 2e-88
Identities = 149/216 (68%), Positives = 171/216 (79%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
LKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+V
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRESV 567
Query: 182 AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
+E S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ +DV
Sbjct: 568 SEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDV 627
Query: 362 TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
T+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFN
Sbjct: 628 TDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFN 687
Query: 542 IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPV 649
I DV LH DAIHRGGGQIIPT RR +YA L A P+
Sbjct: 688 ILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPI 723
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 177 bits (431), Expect = 1e-45
Identities = 87/219 (39%), Positives = 127/219 (57%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
L++ KS P+ EESGEH + G GE++++ L DL ++ I I+ SDPV + ET
Sbjct: 620 LRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCETA 679
Query: 182 AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
+ S C S +PNK NR+ M +P+ G+ DI+ G+VN K + + + Y++D+
Sbjct: 680 VDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDL 739
Query: 362 TEARKIWCFGPEGTGPNILVDCSKGV----QYLNEIKDSVVAGFQWAAKEGVMAEENLRG 529
+R IW FGP+ G NIL D + LN +K+ + GFQW +EG + +E +R
Sbjct: 740 LASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRN 799
Query: 530 VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
V F + DV L + I+RGGGQIIPT RR Y+ LTA P
Sbjct: 800 VNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASP 838
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +1
Query: 640 SPRLMEPVYLCEI 678
SPRLMEPVY+ E+
Sbjct: 837 SPRLMEPVYMVEV 849
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 71.7 bits (168), Expect = 9e-14
Identities = 36/71 (50%), Positives = 45/71 (63%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
L L ++DP VQ EE+GEH++ AGE+HLE CLKDL E A I I+ S P+V YRET
Sbjct: 583 LDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRETT 642
Query: 182 AEESDQLCLSK 214
D L +K
Sbjct: 643 IATPDLLAKNK 653
Score = 31.5 bits (68), Expect = 0.12
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 15/103 (14%)
Frame = +2
Query: 308 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSKGVQYL--------- 448
+ F R L E+ D+ E + I FGP+ GPNIL D +K ++
Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKL 783
Query: 449 --NEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDA 571
+++ + VV FQ +G + E ++G+ +I + D+
Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDS 826
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
L R + DP + ++ ES E I++G GELHLE+ ++ + ++ + + P V++RET
Sbjct: 494 LNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFRET 552
Query: 179 VAEE 190
++++
Sbjct: 553 LSKK 556
>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
YakC|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 30.3 bits (65), Expect = 0.27
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 104 LKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 262
+K LEE+ + +K SD V + ++ + P +++FM PMP
Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMP 339
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.9 bits (64), Expect = 0.36
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
L + + DP + + E+G+ ++ G G +HL++ + L + V YRET
Sbjct: 464 LANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGKVQVGYRET 522
Query: 179 VAEESDQLCLSKSPNKHN 232
+ + S + NK N
Sbjct: 523 LIDVSFNSVTLSTENKEN 540
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.62
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 189 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 22
S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 29.1 bits (62), Expect = 0.62
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +2
Query: 44 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 223
+EE+ + A E C++DL++ + K+SD Y T+ ++KS
Sbjct: 198 DEETLHELFPNASEF---TCVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVK 248
Query: 224 KHNRLFMKAQPMPDGL 271
KHN+L K +P+P L
Sbjct: 249 KHNKLVKKHKPLPSTL 264
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 27.9 bits (59), Expect = 1.4
Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Frame = +2
Query: 23 DPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 202
D ++ I E+ ++ + L E ++ + E I + + + +++ D
Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNF 472
Query: 203 CLSKSPNKHNRLFMKAQPMPDGLPEDI---DEGRVNPRDDFKTRARYLTEKYEYDVTEAR 373
+ + + L +P+ EDI +E + R+ + Y + + VT ++
Sbjct: 473 RFALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSK 532
Query: 374 KIWCFGPEGTGPNIL 418
+ FGP GTG +L
Sbjct: 533 GVLFFGPPGTGKTLL 547
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 95 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 226
E+C +LE+D I +S +S + A++ DQL S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.3
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Frame = +2
Query: 89 HLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDG 268
HL++CL D +E+ + K + E S +L LSK + + + M
Sbjct: 475 HLKLCLSDSQEELLQLNAKLEKANIVIDEL---NSAKLKLSKQVEEESSMKDDLTEMNQR 531
Query: 269 LPEDID--EGRVNPRDDFKTRARYLTEKYEYD 358
L E I+ E VN +T + T K +Y+
Sbjct: 532 LKEQIESYENEVNSEITSRTLKEFETLKTQYE 563
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = -2
Query: 679 EFHKDIQAP*DGVSS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 518
E K IQ G ++ Q + CW++L+TTS + + II + TT I
Sbjct: 187 ELAKQIQETSLGATT-QEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 397 LGAKAPNLTGFGNIVFVLFCKIPSAS 320
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 606 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 487
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 269 LPEDIDEGRVNPRDDFKT 322
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 582 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 442
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 589 PNHSNN*KMLVRMSANCSPRLMEP 660
P+H+N + +R+S N RLMEP
Sbjct: 469 PSHANEDMVRLRISRNGEERLMEP 492
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +2
Query: 365 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 454
E + GP G+G ++LVD S+ Q +NE
Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 443 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 535
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,951
Number of Sequences: 5004
Number of extensions: 66890
Number of successful extensions: 240
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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