Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0836
(680 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 315 2e-86
04_01_0103 + 1082077-1082167,1083037-1085477 312 2e-85
02_04_0017 + 18937774-18937864,18938505-18940945 312 2e-85
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 280 6e-76
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 207 7e-54
03_05_0511 + 25056018-25059107 69 3e-12
02_04_0148 - 20198407-20201424 64 7e-11
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 48 5e-06
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 39 0.003
04_01_0330 - 4369326-4370852 30 2.0
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353... 29 2.6
06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027 29 3.4
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 4.5
10_08_0621 + 19328357-19329545,19329967-19329986 28 6.0
10_08_0081 + 14710478-14710822 28 6.0
10_01_0230 - 2433082-2434674 28 6.0
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466... 28 7.9
02_02_0340 + 9135846-9138377 28 7.9
01_07_0239 + 42222024-42222133,42222220-42222301,42222396-422224... 28 7.9
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 315 bits (774), Expect = 2e-86
Identities = 151/218 (69%), Positives = 177/218 (81%), Gaps = 3/218 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRET 178
LKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVVS+RET
Sbjct: 504 LKRLAKSDPMVLCTVEESGEHIIAGAGELHLEICLKDLQEDFMGGAEITVSPPVVSFRET 563
Query: 179 VAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYD 358
V E+S + +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K R++ L+E++ +D
Sbjct: 564 VLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWD 623
Query: 359 VTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENL--RGV 532
A+KIWCFGPE TGPNI+VD KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+ RG+
Sbjct: 624 KDLAKKIWCFGPETTGPNIVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGRGI 683
Query: 533 RFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
F + DV LH+DAIHRGGGQIIPT RR +YA LTA P
Sbjct: 684 CFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKP 721
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 312 bits (766), Expect = 2e-85
Identities = 146/216 (67%), Positives = 175/216 (81%), Gaps = 1/216 (0%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRET 178
LKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVVS+RET
Sbjct: 508 LKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRET 567
Query: 179 VAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYD 358
V E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D
Sbjct: 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWD 627
Query: 359 VTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRF 538
A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F
Sbjct: 628 KDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICF 687
Query: 539 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
+ DV LH DAIHRGGGQ+IPT RR +YA LTA P
Sbjct: 688 EVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 723
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 312 bits (766), Expect = 2e-85
Identities = 146/216 (67%), Positives = 175/216 (81%), Gaps = 1/216 (0%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRET 178
LKRLAKSDPMV C EESGEHI+AGAGELHLEICLKDL+ED I S PVVS+RET
Sbjct: 508 LKRLAKSDPMVLCTIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRET 567
Query: 179 VAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYD 358
V E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R++ L+E++ +D
Sbjct: 568 VLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWD 627
Query: 359 VTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRF 538
A+KIWCFGPE TGPN++VD KGVQYLNEIKDSVVAGFQWA+KEG +AEEN+RG+ F
Sbjct: 628 KDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRGICF 687
Query: 539 NIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
+ DV LH DAIHRGGGQ+IPT RR +YA LTA P
Sbjct: 688 EVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKP 723
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 280 bits (687), Expect = 6e-76
Identities = 133/224 (59%), Positives = 170/224 (75%), Gaps = 9/224 (4%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDH-ACIPIKKSDPVVSYRET 178
LKRLAKSDP+V C EESGEH++AG G+LHLEIC+KDL+ED I P+++YRET
Sbjct: 510 LKRLAKSDPLVVCTIEESGEHVIAGVGQLHLEICIKDLQEDFMGGAEIIVGPPIITYRET 569
Query: 179 VAEESDQLCLSKSPNKHNRLFMKAQPMP-DGLPED-------IDEGRVNPRDDFKTRARY 334
V + S + +SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+DD K R +
Sbjct: 570 VTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKDDIKERGKI 629
Query: 335 LTEKYEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAE 514
L+E++ +D A+KIW FGPE GPN+LVD KGVQYL+EIKDSVVAGFQWA+KEG +AE
Sbjct: 630 LSEEFGWDKDLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIKDSVVAGFQWASKEGALAE 689
Query: 515 ENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
EN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA P
Sbjct: 690 ENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASP 733
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 207 bits (505), Expect = 7e-54
Identities = 96/219 (43%), Positives = 144/219 (65%), Gaps = 4/219 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
L++++KS P+ EESGEH + G GEL+L+ +KDL E ++ + +K +DPVV++ ETV
Sbjct: 631 LRKISKSYPLAVTKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVTFCETV 690
Query: 182 AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
+ S C +++PNK N++ M A+P+ GL EDI+ G V+ K + ++Y++DV
Sbjct: 691 VDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDV 750
Query: 362 TEARKIWCFGPEGTGPNILVDCSKGVQ----YLNEIKDSVVAGFQWAAKEGVMAEENLRG 529
AR IW FGPE GPNIL+D + V+ LN +KDS+V GFQW A+EG + +E +R
Sbjct: 751 LAARSIWAFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGAREGPLCDEPIRN 810
Query: 530 VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
V+F I + + + +HRGGGQIIPT RR +Y+ L A+P
Sbjct: 811 VKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANP 849
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 69.3 bits (162), Expect = 3e-12
Identities = 35/76 (46%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
LK L ++DP V+ + GEH++A AGE+HLE C KDLEE A + + SDP+VS++ET+
Sbjct: 557 LKLLNRADPFVEYTVSQRGEHVLAAAGEIHLERCKKDLEERFAKVKLVVSDPLVSFKETI 616
Query: 182 AEESDQLCLS-KSPNK 226
E L S K+P +
Sbjct: 617 EGEGLALIESLKAPRE 632
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 64.5 bits (150), Expect = 7e-11
Identities = 27/63 (42%), Positives = 45/63 (71%)
Frame = +2
Query: 2 LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
LK L ++DP ++ E GEH++A AGE+HLE C+K+L+E A + ++ S P+VS+++T+
Sbjct: 537 LKLLNQADPFIEYTVSERGEHVLAAAGEIHLEHCIKNLQERFARVQLEVSKPLVSFKDTI 596
Query: 182 AEE 190
E
Sbjct: 597 QGE 599
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 48.4 bits (110), Expect = 5e-06
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 5/92 (5%)
Frame = +2
Query: 2 LKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
L R K DP + ++ ESGE I++G GELHL+I ++ + ++ + K P V++RET
Sbjct: 498 LNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERIRREYK-VDAKVGKPRVNFRET 556
Query: 179 VAE--ESDQLCLSKS--PNKHNRLFMKAQPMP 262
+ + E D L +S ++ R+ +P+P
Sbjct: 557 ITQRAEFDYLHKKQSGGQGQYGRVCGYIEPLP 588
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 2 LKRLAKSDPMVQCI-NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
L +LA+ DP +EE+ + ++ G GELHL+I + L+ + + P V+YRE+
Sbjct: 478 LIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRLKREFR-VEANVGAPQVNYRES 536
Query: 179 VAEESD 196
+++ S+
Sbjct: 537 ISKISE 542
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.0
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 603 VGMIWPPPLWMASVWSVTS 547
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>10_01_0323 +
3530246-3530446,3531091-3531726,3531860-3532018,
3532276-3532569,3557747-3557941,3558875-3559095,
3559190-3559373,3559797-3559973,3561319-3561824,
3561880-3562060
Length = 917
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -2
Query: 553 YIIDVESNTTQILFSHNSFLSGPLESSHNRVLNFIEVLNSFGAIHQ 416
Y I++ I+ S+N L G LES H+R L+ V A+H+
Sbjct: 644 YAINIAHRRVDIMDSNNYNLIGTLESDHHRALSKRIVKRLSDALHE 689
>06_03_0555 + 22080522-22080845,22081190-22081290,22081916-22082027
Length = 178
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 369 PVRFGALAPRVPAPTSWWIAPKEFSTSMKLRTLLWLDSSGPLRK 500
P R PR+ PTS + P+E +T+ + W D G +R+
Sbjct: 58 PARLRVARPRIQRPTSSHVEPEEVTTASR-----WRDGRGSVRR 96
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 188 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 277
E + LCL PN+H + + A+ +P LPE
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71
>10_08_0621 + 19328357-19329545,19329967-19329986
Length = 402
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +2
Query: 356 DVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEG 502
DVT +R+I P G G I + GV +L S+V F+W G
Sbjct: 322 DVTGSREIRMM-PFGAGRRICAGLNVGVMHLEYFVGSMVMEFEWKEVAG 369
>10_08_0081 + 14710478-14710822
Length = 114
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 222 LGDFERQSWSDSSATVSRYDTTGSDFLIGMQAWSS-SRSLRQISRWSSPAPAT 67
+ R SWSD V+R T+ + + W+ R +R S WSS AP T
Sbjct: 1 MSHLRRLSWSDQ--VVARQPTSEEEDVDAGGRWTEVRRKVRPHSWWSSNAPTT 51
>10_01_0230 - 2433082-2434674
Length = 530
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 356 DVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 535
D+T R+I P G G I +L ++VA F+W A EG + + +
Sbjct: 452 DITGTREIRMM-PFGAGRRICPGLGVATLHLEYFVANMVAAFEWRAAEGEAVDVDGEKLE 510
Query: 536 FNI 544
F +
Sbjct: 511 FTV 513
>09_04_0574 +
18645363-18645870,18645995-18646491,18646631-18646696,
18646921-18646989,18647401-18647466
Length = 401
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -3
Query: 96 SRWSSPAP-ATMCSPDSSLIHCTMGSDLARRLS 1
S W P+P AT PDSSL DL R+LS
Sbjct: 247 SAWEEPSPPATSLLPDSSLPSKRPRDDLPRQLS 279
>02_02_0340 + 9135846-9138377
Length = 843
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 162 TTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCS 58
TTGSD L G+Q + R+L I+ P +CS
Sbjct: 801 TTGSDVLDGLQPHYNLRALGIINHGGPTGPGWLCS 835
>01_07_0239 +
42222024-42222133,42222220-42222301,42222396-42222486,
42222702-42222814,42222912-42222984,42223080-42223178,
42223201-42223406,42223693-42223832,42223912-42223969,
42224067-42224137,42224207-42224741
Length = 525
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 508 HNSFLSGPLESSHNRVLNFIEVLNSF 431
HN L+ +E+SH VL FI +L SF
Sbjct: 183 HNGNLTNRMETSHEEVLPFIFLLLSF 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,135,876
Number of Sequences: 37544
Number of extensions: 498171
Number of successful extensions: 1603
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1596
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -