Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0836
         (680 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15805-1|CAA33804.1|  844|Drosophila melanogaster protein ( Dros...   414   e-116
AY075481-1|AAL68292.1|  844|Drosophila melanogaster RE38659p pro...   413   e-115
AE014134-3534|AAN11135.1|  832|Drosophila melanogaster CG2238-PC...   413   e-115
AE014134-3533|AAG22125.2|  832|Drosophila melanogaster CG2238-PB...   413   e-115
AE014134-3532|AAF57226.2|  844|Drosophila melanogaster CG2238-PA...   413   e-115
AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p pro...   203   2e-52
AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA...   203   2e-52
BT003756-1|AAO41435.1|  674|Drosophila melanogaster RE71343p pro...    62   7e-10
AY058769-1|AAL13998.1|  949|Drosophila melanogaster SD04694p pro...    59   5e-09
AE014296-2740|AAF49461.3| 1033|Drosophila melanogaster CG33158-P...    59   5e-09
AE014134-1251|AAF52495.2|  745|Drosophila melanogaster CG4567-PA...    46   6e-05
BT023763-1|AAZ41771.1|  639|Drosophila melanogaster RE37786p pro...    44   2e-04
AE014297-3196|AAF56031.2|  692|Drosophila melanogaster CG31159-P...    33   0.48 

>X15805-1|CAA33804.1|  844|Drosophila melanogaster protein (
            Drosophila DMEF2 genefor the translation elongation
            factor 2. ).
          Length = 844

 Score =  414 bits (1019), Expect = e-116
 Identities = 184/215 (85%), Positives = 202/215 (93%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            LKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV
Sbjct: 510  LKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 569

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
            +EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+FK RARYL+EKY+YDV
Sbjct: 570  SEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGEVSAKDEFKARARYLSEKYDYDV 629

Query: 362  TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
            TEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQWA+KEG++A+ENLRGVRFN
Sbjct: 630  TEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFN 689

Query: 542  IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
            IYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P
Sbjct: 690  IYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKP 724



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 KMLVRMSANCSPRLMEPVYLCEI 678
           + L   +    PRLMEPVYLCEI
Sbjct: 713 RCLYAAAITAKPRLMEPVYLCEI 735


>AY075481-1|AAL68292.1|  844|Drosophila melanogaster RE38659p protein.
          Length = 844

 Score =  413 bits (1017), Expect = e-115
 Identities = 184/215 (85%), Positives = 202/215 (93%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            LKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV
Sbjct: 510  LKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 569

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
            +EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+FK RARYL+EKY+YDV
Sbjct: 570  SEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDV 629

Query: 362  TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
            TEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQWA+KEG++A+ENLRGVRFN
Sbjct: 630  TEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFN 689

Query: 542  IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
            IYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P
Sbjct: 690  IYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKP 724



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 KMLVRMSANCSPRLMEPVYLCEI 678
           + L   +    PRLMEPVYLCEI
Sbjct: 713 RCLYAAAITAKPRLMEPVYLCEI 735


>AE014134-3534|AAN11135.1|  832|Drosophila melanogaster CG2238-PC,
            isoform C protein.
          Length = 832

 Score =  413 bits (1017), Expect = e-115
 Identities = 184/215 (85%), Positives = 202/215 (93%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            LKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV
Sbjct: 498  LKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 557

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
            +EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+FK RARYL+EKY+YDV
Sbjct: 558  SEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDV 617

Query: 362  TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
            TEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQWA+KEG++A+ENLRGVRFN
Sbjct: 618  TEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFN 677

Query: 542  IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
            IYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P
Sbjct: 678  IYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKP 712



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 KMLVRMSANCSPRLMEPVYLCEI 678
           + L   +    PRLMEPVYLCEI
Sbjct: 701 RCLYAAAITAKPRLMEPVYLCEI 723


>AE014134-3533|AAG22125.2|  832|Drosophila melanogaster CG2238-PB,
            isoform B protein.
          Length = 832

 Score =  413 bits (1017), Expect = e-115
 Identities = 184/215 (85%), Positives = 202/215 (93%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            LKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV
Sbjct: 498  LKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 557

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
            +EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+FK RARYL+EKY+YDV
Sbjct: 558  SEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDV 617

Query: 362  TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
            TEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQWA+KEG++A+ENLRGVRFN
Sbjct: 618  TEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFN 677

Query: 542  IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
            IYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P
Sbjct: 678  IYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKP 712



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 KMLVRMSANCSPRLMEPVYLCEI 678
           + L   +    PRLMEPVYLCEI
Sbjct: 701 RCLYAAAITAKPRLMEPVYLCEI 723


>AE014134-3532|AAF57226.2|  844|Drosophila melanogaster CG2238-PA,
            isoform A protein.
          Length = 844

 Score =  413 bits (1017), Expect = e-115
 Identities = 184/215 (85%), Positives = 202/215 (93%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            LKRLAKSDPMVQCI EESGEHI+AGAGELHLEICLKDLEEDHACIP+KKSDPVVSYRETV
Sbjct: 510  LKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRETV 569

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
            +EESDQ+CLSKSPNKHNRL MKA PMPDGLPEDID G V+ +D+FK RARYL+EKY+YDV
Sbjct: 570  SEESDQMCLSKSPNKHNRLLMKALPMPDGLPEDIDNGDVSAKDEFKARARYLSEKYDYDV 629

Query: 362  TEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFN 541
            TEARKIWCFGP+GTGPN ++DC+K VQYLNEIKDSVVAGFQWA+KEG++A+ENLRGVRFN
Sbjct: 630  TEARKIWCFGPDGTGPNFILDCTKSVQYLNEIKDSVVAGFQWASKEGILADENLRGVRFN 689

Query: 542  IYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHP 646
            IYDVTLH DAIHRGGGQIIPTTRRCLYA  +TA P
Sbjct: 690  IYDVTLHADAIHRGGGQIIPTTRRCLYAAAITAKP 724



 Score = 31.5 bits (68), Expect = 1.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 KMLVRMSANCSPRLMEPVYLCEI 678
           + L   +    PRLMEPVYLCEI
Sbjct: 713 RCLYAAAITAKPRLMEPVYLCEI 735


>AY089551-1|AAL90289.1|  975|Drosophila melanogaster LD28793p protein.
          Length = 975

 Score =  203 bits (496), Expect = 2e-52
 Identities = 99/229 (43%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            L+++ KS P++    EESGEH++ G GEL+L+  + DL + ++ I IK +DPVV++ ETV
Sbjct: 610  LRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 669

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
             E S   C +++PNK N++ M ++P+  GL EDI+ G V    + K    +    Y++D+
Sbjct: 670  VETSSLKCFAETPNKKNKITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDL 729

Query: 362  TEARKIWCFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRG 529
              AR IW FGP+ TGPNILVD           L  +KDS+V GFQW  +EG + EE +R 
Sbjct: 730  LAARSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRN 789

Query: 530  VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFVK 676
            V+F I D  +  +A+HRGGGQIIPT RR  Y+  L A P     Y+FV+
Sbjct: 790  VKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVE 838


>AE014297-4212|AAF56769.1|  975|Drosophila melanogaster CG4849-PA
            protein.
          Length = 975

 Score =  203 bits (496), Expect = 2e-52
 Identities = 99/229 (43%), Positives = 142/229 (62%), Gaps = 4/229 (1%)
 Frame = +2

Query: 2    LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
            L+++ KS P++    EESGEH++ G GEL+L+  + DL + ++ I IK +DPVV++ ETV
Sbjct: 610  LRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 669

Query: 182  AEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 361
             E S   C +++PNK N++ M ++P+  GL EDI+ G V    + K    +    Y++D+
Sbjct: 670  VETSSLKCFAETPNKKNKITMISEPLEKGLAEDIENGTVCINWNKKRIGEFFQVNYDWDL 729

Query: 362  TEARKIWCFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRG 529
              AR IW FGP+ TGPNILVD           L  +KDS+V GFQW  +EG + EE +R 
Sbjct: 730  LAARSIWAFGPDSTGPNILVDDTLPSEVDKNLLTAVKDSIVQGFQWGTREGPLCEEPIRN 789

Query: 530  VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAHPVSWSLYIFVK 676
            V+F I D  +  +A+HRGGGQIIPT RR  Y+  L A P     Y+FV+
Sbjct: 790  VKFKILDGVIANEALHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFVE 838


>BT003756-1|AAO41435.1|  674|Drosophila melanogaster RE71343p
           protein.
          Length = 674

 Score = 62.1 bits (144), Expect = 7e-10
 Identities = 29/64 (45%), Positives = 45/64 (70%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
           L+++ KS P++    EESGEH++ G GEL+L+  + DL + ++ I IK +DPVV++ ETV
Sbjct: 610 LRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVAFCETV 669

Query: 182 AEES 193
            E S
Sbjct: 670 VETS 673


>AY058769-1|AAL13998.1|  949|Drosophila melanogaster SD04694p
           protein.
          Length = 949

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
           LK L ++D  VQ     +GEH++   GE+H+E C+ DLE+ +A I +  S P+VS+RET+
Sbjct: 524 LKLLNQADACVQVSVAPTGEHVITTLGEVHVEKCVHDLEQSYAKIKVNVSKPIVSFRETI 583


>AE014296-2740|AAF49461.3| 1033|Drosophila melanogaster CG33158-PB
           protein.
          Length = 1033

 Score = 59.3 bits (137), Expect = 5e-09
 Identities = 26/60 (43%), Positives = 40/60 (66%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 181
           LK L ++D  VQ     +GEH++   GE+H+E C+ DLE+ +A I +  S P+VS+RET+
Sbjct: 608 LKLLNQADACVQVSVAPTGEHVITTLGEVHVEKCVHDLEQSYAKIKVNVSKPIVSFRETI 667


>AE014134-1251|AAF52495.2|  745|Drosophila melanogaster CG4567-PA
           protein.
          Length = 745

 Score = 45.6 bits (103), Expect = 6e-05
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCI-NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
           + R  K DP      + +  E +V+G GELHLEI  + +E ++ C P+    P V++RET
Sbjct: 464 IARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC-PVTLGKPKVAFRET 522

Query: 179 VAE--ESDQLCLSKS--PNKHNRLFMKAQPMP---DGLPEDIDE 289
           +    E D L   +S    ++ R+    +P+P   + L E +DE
Sbjct: 523 LVGPCEFDYLHKKQSGGSGQYARIIGVMEPLPPNQNTLLEFVDE 566


>BT023763-1|AAZ41771.1|  639|Drosophila melanogaster RE37786p
           protein.
          Length = 639

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCI-NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
           + R  K DP      + +  E +V+G GELHLEI  + +E ++ C P+    P V++RET
Sbjct: 464 IARFTKEDPTFHFFFDNDVKETLVSGMGELHLEIYAQRMEREYGC-PVTLGKPKVAFRET 522

Query: 179 V 181
           +
Sbjct: 523 L 523


>AE014297-3196|AAF56031.2|  692|Drosophila melanogaster CG31159-PA
           protein.
          Length = 692

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = +2

Query: 2   LKRLAKSDPMVQCINEE-SGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 178
           LK+L + DP ++   +  +G+ ++ G GELH++I    +  ++  I +      ++Y+ET
Sbjct: 422 LKQLQREDPSLRVSYDSVTGQTVLGGMGELHMDIIKSRILSEYK-IDVDLGPLQIAYKET 480

Query: 179 V 181
           +
Sbjct: 481 I 481


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,320,914
Number of Sequences: 53049
Number of extensions: 800441
Number of successful extensions: 2223
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2221
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)