Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0833
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 50 4e-07
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.7
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 27 3.0
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|... 26 5.2
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 25 6.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.0
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 25 9.0
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo... 25 9.0
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz... 25 9.0
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi... 25 9.0
>SPAC1635.01 |||voltage-dependent anion-selective
channel|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 4e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Frame = +2
Query: 218 NQES-GKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQ 394
NQ++ G + G L + F K GLT ++ W T N L + + + ++ A GL + + TF+P
Sbjct: 45 NQDAKGVISGKLETSFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPA 104
Query: 395 TGTKTGKLKTSFTNDTVAVNTNLD 466
T KT L + + + +++
Sbjct: 105 TAAKTAILNLEHQHPLIHTHASVN 128
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +1
Query: 79 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEF 198
MAPP YA + K ND+ + + G L ++T + +GV F
Sbjct: 1 MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF 40
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +2
Query: 365 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 469
V++E P+ T +G+++T+F DT+ + L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 137 AITLVFSNST*RPRASLVLNSPAGSRSNQESGKVFGSLSSK 259
A ++ + ST P AS N+P+ S+ NQ+ SL SK
Sbjct: 495 ADAIIQTQSTKPPTASSTTNNPSSSQINQKRSYSTSSLFSK 535
>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 209 SRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 325
S+ + V +L S +K + LTF +W + +AT
Sbjct: 185 SQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIAT 223
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = +2
Query: 209 SRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNT 316
++SNQ K+ +L+ + K + + K DNT
Sbjct: 1158 TQSNQSKDKIIAALAKRNVYKSFAGLYDSKGKNDNT 1193
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 314 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 412
T+A D++ ++ A VTLEGT +TG TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 9.0
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +2
Query: 62 FIKHSTWLPHTMLTLE 109
FIKH+ W+ +LTL+
Sbjct: 288 FIKHAEWMSQVLLTLQ 303
>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 64 YKTQHMAPPYYADLGKKANDVFSK 135
YK H+A + D+GK+ DVF K
Sbjct: 449 YKNHHLASTFVQDVGKE--DVFEK 470
>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 25.0 bits (52), Expect = 9.0
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 145 FGVFKLDLKTKSESGVEFTSGITLQPGKRKGFWQPFLQICSERLWLDFHREVEHRQYISY 324
F VFK L S V F GITL+P +R+ F++ ++++ + + V Q +S
Sbjct: 4 FNVFKAVLCAYFIS-VVFGHGITLKPHQRECFYENLRN--NDQMSVTYQTNVGGDQLVSM 60
Query: 325 *HHNP 339
+NP
Sbjct: 61 SIYNP 65
>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = -3
Query: 228 LSWLERDPAGEFNTRLALGLQVEFENTKVIALAE 127
L WL + AG + A+G+Q N+ I +
Sbjct: 398 LGWLNNNVAGHYKRATAIGIQQTLANSSGIVAGQ 431
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,605
Number of Sequences: 5004
Number of extensions: 49932
Number of successful extensions: 125
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -