Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0833
(629 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0166 + 15278511-15278862,15279790-15280049,15280153-152802... 30 1.3
09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964 30 1.3
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 30 1.7
01_06_1545 + 38144624-38145301 29 3.0
10_05_0042 + 8481227-8481764,8482291-8482418,8483349-8483933,848... 29 4.0
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 7.0
06_03_0143 + 17215975-17216745 28 7.0
06_03_0033 + 15719864-15720049,15720139-15720601,15720638-157212... 28 7.0
05_03_0373 - 13194723-13195847,13196219-13196809 28 7.0
10_08_0271 - 16382655-16384451 27 9.3
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 27 9.3
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327... 27 9.3
>09_04_0166 +
15278511-15278862,15279790-15280049,15280153-15280251,
15280788-15280961,15283009-15283638
Length = 504
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 181 ESGVEFTSGITLQPGKRKGFWQPFLQICSERLWLDFHR 294
E G F +G+ L G +GF F ++ S+ W D R
Sbjct: 36 ELGATFVAGVVLVYGLSQGFAGSFFRVASDYYWKDVQR 73
>09_02_0010 - 2940063-2940688,2940825-2941746,2941752-2941964
Length = 586
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 155 SNST*RPRASLVLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDIT 334
+N+ RP+ N P R + G G+ S++ ++KD L F + TD L+ +
Sbjct: 284 NNNRYRPQGGQGWNQP---RPYYQGGNNNGNFSNQPSLKD--LVFAQAETTD-ALSKKLA 337
Query: 335 IQDKIAAGLKVTLEG 379
+ DKI + V L+G
Sbjct: 338 VNDKILENINVKLDG 352
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +1
Query: 79 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGIT 213
MAP Y D+GKK D+ + Y K L T + GV T+ T
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGT 44
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -3
Query: 522 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 367
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 366 TLRPA 352
+ A
Sbjct: 89 VVSDA 93
>10_05_0042 +
8481227-8481764,8482291-8482418,8483349-8483933,
8484033-8484061,8485221-8485612,8486038-8486454,
8486587-8486668,8487116-8487686
Length = 913
Score = 28.7 bits (61), Expect = 4.0
Identities = 23/82 (28%), Positives = 37/82 (45%)
Frame = +2
Query: 134 RAITLVFSNST*RPRASLVLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDN 313
R + N+ RP+ N P R + G G+ S++ ++KD L F + T N
Sbjct: 52 REEAMYMGNNGYRPQGGQGWNQP---RPYYQGGNNNGNFSNQPSLKD--LVFAQA-KTTN 105
Query: 314 TLATDITIQDKIAAGLKVTLEG 379
L+ + DKI + V L+G
Sbjct: 106 ALSKMLVANDKILENINVKLDG 127
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 429 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 301
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>06_03_0143 + 17215975-17216745
Length = 256
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = -3
Query: 567 TLLFVYQTGCVHQPSQPW*FSTAATSTTGPAKSRSKLVFTATVSLVNEVFNFPVLVPVC- 391
+LLF +G QP+QP + ++T P +S + T+ L P ++ C
Sbjct: 39 SLLFPSSSGASSQPAQPGPGAASSTIPAFPEQSEAAAA-TSVCQLAPSPPLLPAVLASCN 97
Query: 390 --GAKVPSRVTLRPAAILSWIVMSVA 319
G +P R+ P A+ +W+ + A
Sbjct: 98 AGGGALPPRLRCCP-ALAAWMYAAYA 122
>06_03_0033 +
15719864-15720049,15720139-15720601,15720638-15721254,
15721300-15721869,15723625-15724140
Length = 783
Score = 27.9 bits (59), Expect = 7.0
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +2
Query: 170 RPRASLVLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKI 349
R A + N+ G R Q G G+ S++ ++KD L F + NT + L+ + DKI
Sbjct: 199 REEAMYMGNNNNGYRP-QGGGNNNGNFSNQPSLKD--LVFAQA-NTTDALSKKLAANDKI 254
Query: 350 AAGLKVTLEG 379
+ V L+G
Sbjct: 255 LENIDVKLDG 264
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 377 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 475
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
>10_08_0271 - 16382655-16384451
Length = 598
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 561 LFVYQTGCVHQPSQPW*FSTAATSTTGPAKS-RSKLVFTATVSLV 430
+FV+Q V + +PW FS A + G AKS RS+L+ S V
Sbjct: 365 VFVWQDK-VRRLERPWLFSFAGAARPGSAKSIRSELIAQCRASSV 408
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 27.5 bits (58), Expect = 9.3
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 1 EIGRARQFAWNSL*NNTNL*IYKTQHMAPPYYAD-LGKKANDVFSKGYHFGVFKLDLKT- 174
+ G AR F N NTN + +MAP Y ++ + +DVFS FGV L++ +
Sbjct: 518 DFGMARIFGSNMTEANTNRVVGTYGYMAPEYASEGIFSVKSDVFS----FGVLLLEIVSG 573
Query: 175 KSESG 189
K SG
Sbjct: 574 KRNSG 578
>04_04_1265 -
32231511-32231813,32231906-32232024,32232511-32232721,
32232870-32232942,32233329-32233603,32233684-32233831,
32233906-32234143,32234325-32234457,32234852-32235045,
32235114-32235218,32235332-32236640
Length = 1035
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = +1
Query: 1 EIGRARQFAWNSL*NNTNL*IYKTQHMAPPYYADLGKKANDVFSKGYHFGVFKLDL 168
+ G AR F N NTN + +M+P Y D A V S Y FGV L++
Sbjct: 637 DFGMARIFGGNQHEANTNRVVGTYGYMSPEYAMD---GAFSVKSDTYSFGVILLEI 689
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,416
Number of Sequences: 37544
Number of extensions: 329220
Number of successful extensions: 810
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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