Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0833
(629 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 121 6e-28
SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 1.8
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 28 7.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 121 bits (291), Expect = 6e-28
Identities = 52/107 (48%), Positives = 77/107 (71%)
Frame = +2
Query: 203 AGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGT 382
AGS N ++GKVFGSL +K+ DYG++ +EKW TDN L+++IT++D+IA GLK+ + T
Sbjct: 140 AGSSMN-DTGKVFGSLETKYKYSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTT 198
Query: 383 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGW 523
FAP TG K+ K+KT++ D + ++D D AGP V +AV+ Y+GW
Sbjct: 199 FAPNTGKKSAKIKTAYKQDYLHATGDVDFDFAGPTVQGSAVVGYEGW 245
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/45 (57%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Frame = +1
Query: 85 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEF-TSGITL 216
P Y DLGK+A DVF KGY FG K+DLKT +++GVEF T+G ++
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSM 144
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +3
Query: 528 AGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNV 629
AG +DT K+K NNF+LGY++ DF +H+ V
Sbjct: 247 AGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAV 280
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 302 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 451
+TD N L +D + +DK K E T + TGKL+T + DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +2
Query: 194 NSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 346
N +G +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 62 NQKSGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 383 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 520
+AP K +L T F +DT AVN N ++ + +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 425 SFTNDTVAVNTNLDLDLAGPVVDVAAVLN 511
++TN A++T +AGPVV V+A LN
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLN 241
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 308 DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 457
++TLA +ITI + +A G + E TFAP+T TK + + T T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 348 ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSW 220
+ ++ S ANVL V+ SV +KP LEE L W
Sbjct: 871 LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEW 913
>SB_33346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1074
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/54 (25%), Positives = 23/54 (42%)
Frame = +2
Query: 194 NSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAA 355
N+P S+ E G++ +S+ A+ D E DN + I Q +A
Sbjct: 701 NNPVASQPESEKGEISEEMSNGTAIADNRTAVDESGGRDNATTSTIVNQQGASA 754
>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4072
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 314 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLD 466
T T + + +AAG V +GTFAP T +++F T + N+D
Sbjct: 1652 TPITSVANESTVAAGTTVLPDGTFAPGTNVAG---ESTFAPVTSVASENID 1699
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,174,204
Number of Sequences: 59808
Number of extensions: 376002
Number of successful extensions: 971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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