Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0833
(629 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 92 3e-19
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 31 0.51
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 31 0.51
AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical ... 29 2.1
Z82070-5|CAB04915.2| 235|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z75553-2|CAA99949.1| 139|Caenorhabditis elegans Hypothetical pr... 27 8.4
AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical ... 27 8.4
AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical ... 27 8.4
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 91.9 bits (218), Expect = 3e-19
Identities = 45/123 (36%), Positives = 71/123 (57%)
Frame = +2
Query: 158 NST*RPRASLVLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITI 337
+ST R + + + + N SGK+ G+L K+ + YG+T TEKWNT+N L T I +
Sbjct: 29 DSTTRAGDNKEVEFKSAASHNIGSGKLGGNLDVKYKIPQYGITLTEKWNTENQLGTVIEV 88
Query: 338 QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQ 517
++ GLKVTL+ +AP G ++GK+K + T V ++ + A PV++ A V +
Sbjct: 89 NEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSA-PVINAAGVFSRD 147
Query: 518 GWL 526
GWL
Sbjct: 148 GWL 150
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = +1
Query: 79 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITLQPGKRK 234
MAPP +ADLGK A D+F+KGY+FG K+D T++ VEF S + G K
Sbjct: 1 MAPPTFADLGKSAKDLFNKGYNFGFLKIDSTTRAGDNKEVEFKSAASHNIGSGK 54
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical protein
T08A11.1 protein.
Length = 1872
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 212 RSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 328
R + G+ S K+ V +G T EKWN D + TD
Sbjct: 1056 RKHSSKSNSAGNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 212 RSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATD 328
R + G+ S K+ V +G T EKWN D + TD
Sbjct: 1056 RKHSSKSNSAGNASKKYKVWAWGSTGEEKWNVDMEIGTD 1094
>AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical
protein C26G2.2 protein.
Length = 952
Score = 29.5 bits (63), Expect = 2.1
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 275 YGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND-TVAV 451
Y TFT W+T++T+ T QD + + T E T A + + T T + T +V
Sbjct: 460 YPSTFTSSWSTESTVLT-TQQQDTTTSVILETTEATDAASSSLSPDDVSTQLTTEATTSV 518
Query: 452 NTNLDLD 472
+++ D
Sbjct: 519 VSSVPPD 525
>Z82070-5|CAB04915.2| 235|Caenorhabditis elegans Hypothetical
protein W04E12.5 protein.
Length = 235
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 138 ALAEDIIGLLSKVSIVWGSHVLCFINSQIGIISQRIPRKLARATN 4
A +D+ S S+VW +L FI + + I+ +P +++TN
Sbjct: 182 AKMDDVATSASMTSLVWKFAILIFIPTFLAILLYFVPFDFSKSTN 226
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 236 VFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 331
VFG LSS DYG+T K+ TD I
Sbjct: 252 VFGELSSSKKTIDYGITKQWKYRTDGRFELSI 283
>Z75553-2|CAA99949.1| 139|Caenorhabditis elegans Hypothetical
protein ZC443.2 protein.
Length = 139
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/25 (56%), Positives = 14/25 (56%)
Frame = -1
Query: 248 GCQKPFRFPGWSVIPLVNSTPDSLL 174
GC KPFRF S L NS D LL
Sbjct: 61 GCIKPFRFHYSSAFALENSLDDYLL 85
>AC024813-5|AAK27883.1| 255|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1b protein.
Length = 255
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 188 VLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 331
+L G S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 183 MLEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
>AC024813-4|AAK27882.1| 297|Caenorhabditis elegans Hypothetical
protein Y54F10AL.1a protein.
Length = 297
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 188 VLNSPAGSRSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDI 331
+L G S E+ K+F +S+ ++ + LTF +W + L T I
Sbjct: 183 MLEGGGGVASQSETRKIF-LFTSRIFIEAFSLTFVAEWGDRSQLTTII 229
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,118,947
Number of Sequences: 27780
Number of extensions: 283236
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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