Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0833
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.9  

>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 377 GTFAPQTGTKTGKLKTSFTNDTVAVNTNL 463
           GT   Q    TG    +F NDTV+  T +
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 154 FKLDLKTKSESGVEFTSGIT 213
           F+LDL+ + E+G + +S IT
Sbjct: 174 FQLDLQLQDEAGGDISSFIT 193



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/30 (23%), Positives = 16/30 (53%)
 Frame = -3

Query: 606 HQIGNLEQSCSWRTLLFVYQTGCVHQPSQP 517
           H+  +  +   W  ++F+Y   C+ + S+P
Sbjct: 320 HRNADTHEMSEWVKVVFLYWLPCILRMSRP 349


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 29 GILCEIIPICEFI 67
          GI CEI   CEF+
Sbjct: 59 GIKCEIYAKCEFL 71


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 514 PGLAWLVYTPSLIHKKQSS 570
           PGLA+LVY  +++    SS
Sbjct: 356 PGLAFLVYPSAVLELPGSS 374


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 514 PGLAWLVYTPSLIHKKQSS 570
           PGLA+LVY  +++    SS
Sbjct: 409 PGLAFLVYPSAVLELPGSS 427


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,703
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)