Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0833
(629 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ... 34 0.089
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34... 33 0.21
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34... 31 0.63
At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1 [Ra... 28 4.4
At1g11410.1 68414.m01311 S-locus protein kinase, putative simila... 28 5.9
At4g25920.1 68417.m03727 expressed protein contains Pfam profile... 27 7.8
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ... 27 7.8
At1g70620.2 68414.m08137 cyclin-related contains weak similarity... 27 7.8
At1g70620.1 68414.m08138 cyclin-related contains weak similarity... 27 7.8
>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
[Solanum tuberosum] GI:515360; contains Pfam profile
PF01459: Eukaryotic porin
Length = 274
Score = 33.9 bits (74), Expect = 0.089
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 82 APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 204
+P +AD+GKKA D+ +K Y F K L S +G EF +
Sbjct: 4 SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA 43
>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 276
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 85 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 204
P + D+GKKA D+ ++ Y+ K + T S SGV TS
Sbjct: 5 PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS 43
>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
kDa outer mitochondrial membrane protein porin
(Voltage-dependent anion-selective channel protein)
(VDAC) {Solanum tuberosum}; contains Pfam profile
PF01459: Eukaryotic porin
Length = 226
Score = 31.1 bits (67), Expect = 0.63
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 85 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 204
P +AD+GK A D+ ++ Y K + T S SGV TS
Sbjct: 5 PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTS 43
>At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1
[Rattus norvegicus] GI:3250916, ThiJ protein,
Escherichia coli, PIR:H64771; contains Pfam profile
PF01965 ThiJ/PfpI family
Length = 472
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +2
Query: 212 RSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAP 391
R ESG+++G+ +S V EK T +D + ++ G +V ++G
Sbjct: 375 REQHESGRIYGATNSSSTVLHKHGLLKEKRTTVYPSESDEPMNQQMIEGAEVVIDGNVIT 434
Query: 392 QTGTKT 409
G T
Sbjct: 435 SLGLAT 440
>At1g11410.1 68414.m01311 S-locus protein kinase, putative similar
to receptor-like protein kinase [Arabidopsis thaliana]
gi|4008008|gb|AAC95352; contains S-locus glycoprotein
family domain, Pfam:PF00954
Length = 840
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 1 EIGRARQFAWNSL*NNTNL*IYKTQHMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS 180
+ G AR F N + +TN + +M+P Y D G+ + + S Y FGV L++ T
Sbjct: 661 DFGLARIFGGNQIEGSTNRVVGTYGYMSPEYAMD-GQFS--IKSDVYSFGVLILEIITGK 717
Query: 181 ESGVEFTSGITL 216
+ + + L
Sbjct: 718 RNSAFYEESLNL 729
>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
PF03478: Protein of unknown function (DUF295)
Length = 390
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 88 PYYADLGKKANDVFSKGYHFGVFKLDLKT 174
P + G K N ++ GY+FGV+ L KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358
>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 578
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 414 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 253
FP+ V A +P T PA + W+V+S + VL + + + + +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485
>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 884
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 50 PICEFIKHSTWLPHTMLTLERRPMMSSARAI 142
P F H+ W PHT + P+ SSA++I
Sbjct: 307 PPSNFSDHNAWQPHTTSGVVYPPIPSSAQSI 337
>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
I) [Bos taurus]
Length = 897
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 50 PICEFIKHSTWLPHTMLTLERRPMMSSARAI 142
P F H+ W PHT + P+ SSA++I
Sbjct: 294 PPSNFSDHNAWQPHTTSGVVYPPIPSSAQSI 324
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,511,375
Number of Sequences: 28952
Number of extensions: 269426
Number of successful extensions: 789
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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