Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0826
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 31 0.16
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 27 2.0
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 2.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 2.7
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.1
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.1
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 31.1 bits (67), Expect = 0.16
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +2
Query: 299 SAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTA 478
+A+R R G D + +I EV P+P SES + LLQ T LL T+
Sbjct: 352 TARRQRRKKGIDETSKIIEEVQPTPLTSESATKVIGVLLQ--TKDDLLTRKLMERIFLTS 409
Query: 479 TPNTSNTVDSL 511
P+ ++ +L
Sbjct: 410 DPSVCRSIIAL 420
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/61 (40%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -2
Query: 540 LSTSEVPGK-HKLSTVLDVF-GVA----VVWNNVDVPETKSAGSVASCSRDGGEFEVDSD 379
LS +E K +L LD F G+A V N+ TKS GS S S D GE SD
Sbjct: 666 LSETEQAEKIRQLRAQLDRFSGIAQNKNTVTGNIAAYNTKSLGSDDSSSEDDGESSESSD 725
Query: 378 S 376
S
Sbjct: 726 S 726
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Frame = +2
Query: 293 ETSAKRPRPDPGTDVSDRISSEV---NPSPCESESTSNSPPSLLQDATLPALLVSGTSTL 463
E + + D ++ + SEV NPS S T+ + P+L+Q+ + P +S +++
Sbjct: 297 EENQAETQKDGAISNNENMQSEVQTTNPSASTSAVTNITKPTLIQNPSTP---LSVSNSK 353
Query: 464 FQTTATPNTSNT 499
+ TPN ++T
Sbjct: 354 VASPETPNATHT 365
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 365 PSPCESESTSNSPP--SLLQDATLPALLVSGTSTLFQTTATPNTSNTVDSLCLPGTSEVD 538
PS + +T+ PP S+ T+P T+T TTA P T + +P T+ V+
Sbjct: 73 PSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTT---TTAPPTTHVNSTTTVVPPTTHVN 129
Query: 539 SCGIV 553
+ +V
Sbjct: 130 TTTVV 134
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 386 STSNSPPSLLQDATLPALLVSGTSTLFQTTATP 484
S+ N P+L + T P+ + SGT L ATP
Sbjct: 368 SSPNPNPTLAPNPTGPSRVTSGTEDLLSLDATP 400
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Frame = -2
Query: 684 FTPPVLSSFINQATAEDEEVAHRPPD---DVKGSARPPKVVVVAHPLTIPQLSTSEVPGK 514
FTP L S E E + HR + ++ P V PLT S EVPGK
Sbjct: 44 FTPQELQSLA--VNGESEYLQHRISEFLEQLRTENITPIFVFNGIPLTFEASSQLEVPGK 101
Query: 513 HKLSTVLDVF 484
K + L F
Sbjct: 102 QKSHSALTDF 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.1
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Frame = +2
Query: 296 TSAKRPRPDPGTDVSDRISSEVNP----SPCESESTSNSPPSLLQDATLPALLVSGTSTL 463
T+ P P T S S+ + P S + T PP+ ++P S +ST
Sbjct: 100 TTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 159
Query: 464 FQTTATPNTSNT-VDSLCLPGT 526
+ P TS + S +P T
Sbjct: 160 TNSNPLPTTSTSCTTSTSIPPT 181
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.1
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 290 YETSAKRPRPDPGTDVSDRISSEVNPSPCESEST---SNSPPSLLQDATLPALLVSGTST 460
Y TS P P P D + S S +S +T S+SP + + VS T T
Sbjct: 127 YATS-DAPNPIPRGDSATSTSIAPTYSASDSSATTITSSSPSTSIIGTGSTDTSVSSTLT 185
Query: 461 LFQTTATPNTSNTVDS 508
A+P TS+ D+
Sbjct: 186 YHTPIASPTTSSNSDN 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,513
Number of Sequences: 5004
Number of extensions: 45564
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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