Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0826
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0150 + 1741639-1741742,1742432-1742543,1742856-1743594,174... 35 0.074
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 33 0.30
03_05_0006 + 19527479-19528769,19529693-19530105,19530220-195304... 32 0.52
04_04_1184 + 31558678-31558707,31559485-31559644,31559732-315603... 29 3.7
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 28 6.4
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 28 6.4
09_03_0006 + 11426346-11426420,11426733-11427452 28 6.4
07_03_1036 - 23430643-23431311,23431441-23431668 28 6.4
06_03_1315 + 29270679-29270908,29270992-29271394,29271633-292717... 28 6.4
04_04_0675 + 27183826-27184443 28 6.4
01_01_0542 + 3975500-3975546,3976273-3976370,3976694-3976830,397... 28 6.4
05_05_0044 - 21819193-21819418,21819531-21820759 28 8.5
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 28 8.5
>04_01_0150 +
1741639-1741742,1742432-1742543,1742856-1743594,
1743724-1743776,1743914-1743991,1744107-1744405,
1744660-1745476,1745576-1745842,1745987-1746181,
1746287-1746372,1746469-1746657,1747138-1747207,
1747399-1747552,1747706-1747832,1749158-1749254
Length = 1128
Score = 34.7 bits (76), Expect = 0.074
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +2
Query: 311 PRPDPGTDVSDR--ISSEVNPSPCESESTSNSPPSLLQ-DATLPALLVSGTSTLFQTTAT 481
P+P VS I S + SP E + P++ ++TLP + + + T
Sbjct: 555 PKPSVARVVSHSASIKSRLASSPSRPEGAHAASPNITSVESTLPTPIAKPGTVRAASPCT 614
Query: 482 PNTSNTVDSLCLPGTSEVDSC 544
P S + L P +EVDSC
Sbjct: 615 PVKSTSQSQLSKPAVTEVDSC 635
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 290 YETSAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPS 409
Y + RPR PG D+ R+ VN S S + NSP S
Sbjct: 99 YSENDNRPRETPGRDLIARLKERVNASRKRSLNRENSPSS 138
>03_05_0006 +
19527479-19528769,19529693-19530105,19530220-19530430,
19530531-19530768,19530847-19530997,19531240-19531542
Length = 868
Score = 31.9 bits (69), Expect = 0.52
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -2
Query: 534 TSEVPGKHKLSTVLDVFGVAVVWNN-VDVPETKSAGSVASCSRDGGEFEVDSDSQGLGLT 358
T ++ G L+ ++D G VVW + V SAGS + D G F + S G+
Sbjct: 93 TLKINGNGSLA-IVDGQG-RVVWASPVMSASVLSAGSAKAQLLDNGNFVLRFASAGVAWQ 150
Query: 357 SLDIRSETSVPGSGLGL 307
S D ++T +PG LG+
Sbjct: 151 SFDYPTDTLLPGMKLGI 167
>04_04_1184 +
31558678-31558707,31559485-31559644,31559732-31560394,
31560512-31560956,31561090-31561171,31561319-31561534
Length = 531
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +2
Query: 305 KRPRPDPGT-DVSDR-ISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTA 478
K P+ P VS R + +E+ P P + S + +P + P + T ++TA
Sbjct: 281 KDPKAIPAVHSVSVRDVGTEMTPIPSQDPSRTGTPLGSMTPTRSPNCSIPSTPVGGRSTA 340
Query: 479 TPNTSNTVD 505
+P NT D
Sbjct: 341 SPGDDNTDD 349
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 302 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSL 412
AKR PDP + SS +PS SE S+SP S+
Sbjct: 2 AKRSSPDPASSSPSASSSPSSPSSSSSED-SSSPMSM 37
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 302 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSL 412
AKR PDP + SS +PS SE S+SP S+
Sbjct: 2 AKRSSPDPASSSPSASSSPSSPSSSSSED-SSSPMSM 37
>09_03_0006 + 11426346-11426420,11426733-11427452
Length = 264
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 702 DSATSLFTPPVLSSFINQATAEDEEVAHRPPDDVKGSARPPKVVVVAHPLTIPQLSTS 529
D + +PPVL + + + P ++ RPP + H T P +STS
Sbjct: 98 DLCSDSASPPVLRLAVGHRCPDSSAPSPPQPGALRWHRRPPSTALPPHGETAPLVSTS 155
>07_03_1036 - 23430643-23431311,23431441-23431668
Length = 298
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +2
Query: 299 SAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTA 478
S+ P P P S SS +PS ++ S S P L LP L VS ++ + +
Sbjct: 105 SSSFPSPVPSYHASPASSSFPSPSRIDNPSASCLLPFLRGLPNLPPLRVSSSAPVTPPLS 164
Query: 479 TPNTS 493
+P S
Sbjct: 165 SPTAS 169
>06_03_1315 +
29270679-29270908,29270992-29271394,29271633-29271796,
29271943-29272013,29272360-29272559
Length = 355
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 489 VFGVAVVWNNVDVPETKSAGSVASCSRDGG 400
V V VVW+ + P + GSV +CS GG
Sbjct: 113 VDAVHVVWSEPEEPTEELRGSVLNCSDGGG 142
>04_04_0675 + 27183826-27184443
Length = 205
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 302 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLP 433
+KR RP P D D + PSP S S S SPP LP
Sbjct: 79 SKRRRPCPLLDAIDLLDG---PSPSASPSQSPSPPPPASPPPLP 119
>01_01_0542 +
3975500-3975546,3976273-3976370,3976694-3976830,
3977518-3977871,3977953-3978041,3978502-3978589,
3978659-3978734,3978858-3978907,3979032-3979340,
3979803-3979982,3980086-3980325,3980471-3980582,
3980931-3981040,3981162-3981311,3981777-3981932,
3982289-3982405,3982759-3982839,3983338-3983478
Length = 844
Score = 28.3 bits (60), Expect = 6.4
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 299 SAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATL-PALLVSGTSTLFQTT 475
S+ P GT + SSE + +S + S PSL +A+L AL+V GTST
Sbjct: 491 SSSGPANSSGTGNTAVPSSEPSTPSSQSPGDTISMPSLHHNASLSKALVVYGTSTAGTMG 550
Query: 476 ATPNTSNTVDSLCLPGTSE--VDS 541
+ N +D G E VDS
Sbjct: 551 SPSNQLADMDRFVEDGCLEDHVDS 574
>05_05_0044 - 21819193-21819418,21819531-21820759
Length = 484
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 359 VNPSPCESESTSNSPPSLLQDATLPAL 439
V PSPC S S+SPPS ++ PAL
Sbjct: 8 VAPSPCARSSASSSPPS--TSSSRPAL 32
>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
4498179-4499263,4499351-4500296
Length = 1264
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 365 PSPCESESTSNSPPSLLQDATLPALLVSG 451
PSP S S+S+SPP +LP+ + SG
Sbjct: 1232 PSPSPSSSSSSSPPVTRGRGSLPSDVASG 1260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,242,752
Number of Sequences: 37544
Number of extensions: 302228
Number of successful extensions: 1195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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