Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0826
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    25   0.71 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    25   0.71 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    25   0.71 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.71 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   8.8  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 332 DVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNTSNTVDSL 511
           D  + +SSE N +   S   S++ PSL+ D      +  G +T  + T     + T  ++
Sbjct: 249 DAEESVSSETNHNE-RSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTTTV 307


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 332 DVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNTSNTVDSL 511
           D  + +SSE N +   S   S++ PSL+ D      +  G +T  + T     + T  ++
Sbjct: 249 DAEESVSSETNHNE-RSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTTTV 307


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 332 DVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNTSNTVDSL 511
           D  + +SSE N +   S   S++ PSL+ D      +  G +T  + T     + T  ++
Sbjct: 249 DAEESVSSETNHNE-RSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTGSRAAATTTTV 307


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 350 SSEVNPSPCESESTSNSPPSLLQDAT-LPALLVSGTSTLFQTTATPNTSNT 499
           SS  +P P   E   + P      +T LPA + + T+T   TTAT   + T
Sbjct: 76  SSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATAT 126



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +2

Query: 356 EVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNTS-NTVDSLCLPGTSE 532
           E + S   + S  + P +     T      + T+T   TT TPNT+ N   +   P   E
Sbjct: 636 ERDASLSSTHSHPHEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDE 695

Query: 533 VD 538
           VD
Sbjct: 696 VD 697


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 624 AHRPPDDVKGSARPPKVVVVAHPLTIPQLSTSEVPGKHKLSTVLDV-FGVAVVWNNVD 454
           A  PP+ V  +   P   ++      P+L  +  PG+H   TV DV  G+A   N +D
Sbjct: 95  AGTPPEAVSYNVAVPTKSILEKK---PELVDATDPGEHNGDTVTDVEAGLASRTNPLD 149


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 477 RHQTRPIPSTAYACLVL 527
           RH +RP+P+  Y C+ L
Sbjct: 397 RH-SRPVPAKKYDCVTL 412


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 477 RHQTRPIPSTAYACLVL 527
           RH +RP+P+  Y C+ L
Sbjct: 397 RH-SRPVPAKKYDCVTL 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,437
Number of Sequences: 438
Number of extensions: 3622
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)