Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0826
(715 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 34 0.11
At5g34910.1 68418.m04116 hypothetical protein 32 0.33
At2g15300.1 68415.m01745 leucine-rich repeat transmembrane prote... 30 1.3
At1g26150.1 68414.m03192 protein kinase family protein similar t... 30 1.3
At5g43100.1 68418.m05261 aspartyl protease family protein low si... 30 1.8
At5g23890.1 68418.m02806 expressed protein weak similarity to SP... 30 1.8
At5g44290.1 68418.m05421 protein kinase family protein contains ... 29 2.3
At3g06390.1 68416.m00737 integral membrane family protein simila... 29 2.3
At1g21380.1 68414.m02675 VHS domain-containing protein / GAT dom... 29 2.3
At3g18750.1 68416.m02380 protein kinase family protein contains ... 29 4.0
At1g28330.3 68414.m03480 dormancy-associated protein, putative (... 29 4.0
At1g28330.2 68414.m03479 dormancy-associated protein, putative (... 29 4.0
At1g28330.1 68414.m03478 dormancy-associated protein, putative (... 29 4.0
At3g08600.1 68416.m00999 expressed protein 28 5.3
At2g40060.1 68415.m04922 expressed protein 28 5.3
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 28 7.1
At1g79480.1 68414.m09263 hypothetical protein low similarity to ... 28 7.1
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 27 9.3
At4g21610.1 68417.m03132 zinc finger protein, putative similar t... 27 9.3
At3g23010.1 68416.m02901 disease resistance family protein / LRR... 27 9.3
At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid t... 27 9.3
At3g16870.1 68416.m02157 zinc finger (GATA type) family protein ... 27 9.3
At2g45680.1 68415.m05680 TCP family transcription factor, putati... 27 9.3
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +2
Query: 311 PRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTS 457
P P P + +S ++PSP S S S++PPS L ++ P L +S +S
Sbjct: 69 PPPPPSSSPLSSLSPSLSPSP-PSSSPSSAPPSSLSPSSPPPLSLSPSS 116
>At5g34910.1 68418.m04116 hypothetical protein
Length = 203
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 350 SSEVNPSPCESESTSNSPPSL-LQDATLPALLVSGTSTLFQTTAT-PNTSN 496
+ P P E+ T+ +P +L T PA++V+GT+ L T+AT NTS+
Sbjct: 152 TDSTEPEP-ETHPTTTTPSTLPTPTTTAPAIIVAGTTPLVSTSATISNTSS 201
>At2g15300.1 68415.m01745 leucine-rich repeat transmembrane protein
kinase, putative
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 374 CESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNTSNTVDSLCLPGT 526
C ST + PP++ + T PA+ V T+ ++T +T+ T S P T
Sbjct: 286 CSIPSTLSDPPNI-SETTSPAIAVMPTTPTPTNSSTESTNQTAKSKLKPST 335
>At1g26150.1 68414.m03192 protein kinase family protein similar to
Pto kinase interactor 1 GI:3668069 from [Lycopersicon
esculentum]
Length = 760
Score = 30.3 bits (65), Expect = 1.3
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Frame = +2
Query: 296 TSAKRP-RPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATL------PALLVSGT 454
+ +KRP P P + + + PSP S S+SPP+LL +++ P VSG
Sbjct: 247 SDSKRPVHPSPPSPPEETLPPP-KPSPDPLPSNSSSPPTLLPPSSVVSPPSPPRKSVSGP 305
Query: 455 STLFQTTATPNTSNTVDS 508
TP T N+ S
Sbjct: 306 DNPSPNNPTPVTDNSSSS 323
>At5g43100.1 68418.m05261 aspartyl protease family protein low
similarity to CND41, chloroplast nucleoid DNA binding
protein [Nicotiana tabacum] GI:2541876; contains Pfam
profile PF00026: Eukaryotic aspartyl protease
Length = 631
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 287 IYETSAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQ 418
I+ A P P + +S SS ++PSP SES ++ P + +
Sbjct: 420 IWRRLAAPESPAPTSPISQNKSSNISPSPATSESPTSHLPGVFR 463
>At5g23890.1 68418.m02806 expressed protein weak similarity to
SP|P12957 Caldesmon (CDM) {Gallus gallus}
Length = 946
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 311 PRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTL 463
P+ P D+ +++E +P ESE + SLL +T P LL + +S L
Sbjct: 205 PQNTPEADLM--VNAETDPETAESEKIISESKSLLDSSTEPILLDAESSNL 253
>At5g44290.1 68418.m05421 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 644
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 645 TAEDEEVAHRPPDDVKGSARPPKVVVVAHPLTI 547
T EDE+ H PP+++K R P VV+ P T+
Sbjct: 75 TDEDEDDDHHPPEELK---REPSVVIPPSPETV 104
>At3g06390.1 68416.m00737 integral membrane family protein similar
to hypothetical protein GB:CAB10339 [Arabidopsis
thaliana]; contains TIGRFAM TIGR01569 : plant integral
membrane protein TIGR01569; contains Pfam PF04535 :
Domain of unknown function (DUF588)
Length = 199
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Frame = +2
Query: 302 AKRPRPDPGTDVSDRISSEVNPSPCESESTSNS------PPSLLQDATLPALLVSGTSTL 463
A PDP T S+ I + P P + S + LL ATL AL+V TS
Sbjct: 2 ASTENPDPETGKSEPIPASATPPPSSAASFLDCRKIDIITRVLLFSATLTALIVMVTSDQ 61
Query: 464 FQTTATPNTSN 496
+ T P S+
Sbjct: 62 TEMTQLPGVSS 72
>At1g21380.1 68414.m02675 VHS domain-containing protein / GAT
domain-containing protein weak similarity to Hrs [Rattus
norvegicus] GI:8547026; contains Pfam profiles PF00790:
VHS domain, PF03127: GAT domain
Length = 506
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 702 DSATSLFTPPVLSSFINQATAEDEEVA 622
+S+ FTPP + QATA DE+ A
Sbjct: 145 ESSVPFFTPPQTQPIVAQATASDEDAA 171
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Frame = -2
Query: 609 DDVKGSARPPKVVVVAHPLTIPQLSTSEVPGKHKLSTVLDVF----GVAVVWNNVDVPE 445
DD PP V+ T + EV GK TV F G+ V WN V + +
Sbjct: 5 DDASALQEPPDPEVLEVDPTFRYIRYKEVIGKGAFKTVYKAFDEVDGIEVAWNQVRIDD 63
>At1g28330.3 68414.m03480 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 311 PRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNT 490
P+PD G +I+++ E +S S + + T+PA + GT T T TP
Sbjct: 15 PQPDRGLGRLRKITTQPINIRDIGEGSS-SKVVMHRSLTMPAAVSPGTPTTPTTPTTPRK 73
Query: 491 SNTVDSLCLPGTS 529
N S+ PG++
Sbjct: 74 DNVWRSVFNPGSN 86
>At1g28330.2 68414.m03479 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 132
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 311 PRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNT 490
P+PD G +I+++ E +S S + + T+PA + GT T T TP
Sbjct: 15 PQPDRGLGRLRKITTQPINIRDIGEGSS-SKVVMHRSLTMPAAVSPGTPTTPTTPTTPRK 73
Query: 491 SNTVDSLCLPGTS 529
N S+ PG++
Sbjct: 74 DNVWRSVFNPGSN 86
>At1g28330.1 68414.m03478 dormancy-associated protein, putative
(DRM1) identical to dormancy-associated protein
[Arabidopsis thaliana] GI:2995990; similar to
dormancy-associated protein GI:2605887 from [Pisum
sativum]; contains Pfam profile PF05564: Dormancy/auxin
associated protein
Length = 122
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/73 (28%), Positives = 34/73 (46%)
Frame = +2
Query: 311 PRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPNT 490
P+PD G +I+++ E +S S + + T+PA + GT T T TP
Sbjct: 15 PQPDRGLGRLRKITTQPINIRDIGEGSS-SKVVMHRSLTMPAAVSPGTPTTPTTPTTPRK 73
Query: 491 SNTVDSLCLPGTS 529
N S+ PG++
Sbjct: 74 DNVWRSVFNPGSN 86
>At3g08600.1 68416.m00999 expressed protein
Length = 316
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 368 SPCESESTSNSPPSLLQDATLPALLVSGTSTLFQTTATPN 487
S + S+S+S +LLQD + ALL T L++ T P+
Sbjct: 26 SSSPNASSSSSLDALLQDYSFRALLRPRTGILYEATTVPS 65
>At2g40060.1 68415.m04922 expressed protein
Length = 258
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -2
Query: 630 EVAHRPPDDVKGSARPPKVVVVAHPLTIPQLSTSE 526
++ H PP +K +++PP A P +P+ +E
Sbjct: 219 KLKHNPPSHLKLTSQPPSEEAAAPPKNVPETKPTE 253
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 236 TKDFALFSQQKKKSTFDLLITIFMR*LDIVRWLNYISSLH*ELNYNNV*EILYCNTRGGN 57
T+ FA ++K F L I + L + +L+YI E+ N +LY N+RGG+
Sbjct: 124 TQTFAWRPLPEEKRGFTLRIKKKDKTLILNSYLDYIMERANEIRRKNQDRLLYTNSRGGS 183
>At1g79480.1 68414.m09263 hypothetical protein low similarity to
beta-1,3-glucanase-like protein GI:9758115 from
[Arabidopsis thaliana]
Length = 356
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 296 TSAKRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLP 433
+S P+P V + S NP+P +S S NS P+ + ++ P
Sbjct: 115 SSNPNSNPNPPVTVPNPPESSSNPNPPDSSSNPNSNPNPPESSSNP 160
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -3
Query: 236 TKDFALFSQQKKKSTFDLLITIFMR*LDIVRWLNYISSLH*ELNYNNV*EILYCNTRGGN 57
T+ FA ++K F L I + L + +L+YI E+ N +LY N+RGG+
Sbjct: 124 TQTFAWRPMPEEKRGFTLRIKKKDKNLILDSYLDYIMEKANEIRRLNQDRLLYTNSRGGS 183
>At4g21610.1 68417.m03132 zinc finger protein, putative similar to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 155
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 639 EDEEVAHRPPDDVKGSARPPKVVVVAHPLTIPQLSTSEVPGKHKL 505
E+EE PP + + PP +V + + P +T E+P K ++
Sbjct: 18 EEEEEEEGPPPGWESAVLPPPIVTITAAVN-PNPTTVEIPEKAQM 61
>At3g23010.1 68416.m02901 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; contains similarity to
Cf-2.2 [Lycopersicon pimpinellifolium]
gi|1184077|gb|AAC15780
Length = 595
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Frame = -2
Query: 480 VAVVWNNVDVPETKSAGSVASCSRDGGEF-----EVDSDSQGLGLTSLDI---RSETSVP 325
+++VW+ D+P+ K G+V + D + E D D G ++D R +P
Sbjct: 386 MSLVWSGSDIPQFKYMGNVNFSTYDSIDLVYKGVETDFDRIFEGFNAIDFSGNRFSGHIP 445
Query: 324 GSGLGLFAEV 295
GS +GL +E+
Sbjct: 446 GS-IGLLSEL 454
>At3g18280.1 68416.m02325 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to TED4
[Zinnia elegans] GI:493721; contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 96
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 353 SEVNPSPCESESTSNSPPSLLQDATL----PALL-VSGTSTLFQTTATPNTSNTVDSLCL 517
S + SPC + TS+SPPS L A L P L +L + +TPN S L
Sbjct: 32 SPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCKL 91
Query: 518 P 520
P
Sbjct: 92 P 92
>At3g16870.1 68416.m02157 zinc finger (GATA type) family protein
contains Pfam profile:PF00320 GATA:GATA zinc finger
Length = 190
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 118 CNEDM*LSHLTISSYRINIVINKSKVD 198
CN D+ L H Y+INIV + K+D
Sbjct: 96 CNNDLNLDHRNAKKYKINIV-DDGKID 121
>At2g45680.1 68415.m05680 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) [Oryza sativa]
Length = 356
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +2
Query: 305 KRPRPDPGTDVSDRISSEVNPSPCESESTSNSPPSLLQDATLPALLVSG 451
KRP D+SD +S+ +P + +T P +L LL G
Sbjct: 168 KRPSNSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQG 216
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,011,302
Number of Sequences: 28952
Number of extensions: 243255
Number of successful extensions: 910
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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