Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0816
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    27   2.9  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   3.8  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    26   3.8  
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.1  

>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 424 DAEAKSADIKVE-EPAAQPEDSKTEVQATVAEISKEEKPI 540
           D +   +DIK + E +   +DSK +V  TV EIS   +PI
Sbjct: 264 DLKDMQSDIKPDVEKSDAMDDSKMKVDYTVNEISNAVQPI 303


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 342 VFWGYIVLFGLWYSGYLVVTNW 277
           VFW +IVL GL+Y  Y  V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 406 KSSEIPDAEAKSADI-KVEEPAAQPEDSKTEVQATVAEISKEEKPI 540
           K S+ P+ +  +    KVEEP+ + ++   + + TV +  +E+ P+
Sbjct: 446 KPSKEPEVKPTTPSASKVEEPSKKRDEDNHQKEETVTQPKREKTPV 491


>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 551 ASVAIGFSSFEISATVACTSVFESSG*AAGSSTLISA 441
           +S++ G SS   S T A  S   SSG ++GSS+  S+
Sbjct: 450 SSISSGSSSMSTSYTSASGSSAHSSGSSSGSSSATSS 486


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,109
Number of Sequences: 5004
Number of extensions: 30081
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)