Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0816
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0559 + 18516732-18516746,18516893-18517330 34 0.079
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 30 1.3
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 29 3.0
02_01_0201 - 1347868-1347925,1348040-1348135,1348447-1348523,134... 29 3.0
07_01_0513 + 3828196-3828309,3828408-3828722,3828823-3828879,382... 29 3.9
11_06_0315 + 22318155-22318210,22319743-22319769,22319868-223199... 28 5.2
08_02_1167 + 24847689-24848156 28 5.2
08_02_0937 + 22801526-22802461 28 5.2
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 28 5.2
>09_04_0559 + 18516732-18516746,18516893-18517330
Length = 150
Score = 34.3 bits (75), Expect = 0.079
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Frame = +1
Query: 289 DEVPAIP-EAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVE-- 459
+E PA P EA ++ AP ++++A K +E AE ++ K E
Sbjct: 35 EETPAAPAEAVAEEAAPAEAEVAETKEAEPAAAEPAAEEVKEAEPEPAEPEAEPAKEEVA 94
Query: 460 -EPAA--QPEDSKTEVQATVAEISKEEK 534
EPAA + E + E A VAE KEE+
Sbjct: 95 PEPAAAAEAEAKEAEPAAQVAEEVKEEE 122
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Frame = +1
Query: 412 SEIPDAEAKSADIKVEEP---AAQPEDSKTEVQATVAEISKEEKP 537
+E P AEA S + K EEP AA E +K E +A A ++E KP
Sbjct: 167 TEEPKAEASSEEAKTEEPKAEAAADEPAKEESKAEAAP-AEEAKP 210
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +1
Query: 412 SEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATDARRF 561
S P AD+ +E PE+ K +++ + E+ KEE P+ DA F
Sbjct: 11 SSSPPRPHPEADMVNKEK--DPEEMKRKLKERILELEKEEVPLPDDASAF 58
>02_01_0201 -
1347868-1347925,1348040-1348135,1348447-1348523,
1349385-1349453,1349576-1349629,1350295-1350350,
1350487-1350694,1350978-1351066,1351163-1351187
Length = 243
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 503 ACTSVFESSG*AAGSSTLISADFASASGISDDF 405
+CT +F+SS +A + ++A FA AS D+F
Sbjct: 64 SCTYIFDSSDASASGAADVAATFAKASRKMDEF 96
>07_01_0513 +
3828196-3828309,3828408-3828722,3828823-3828879,
3829668-3829826,3829918-3830028,3830173-3830259,
3830359-3830591,3830808-3830886,3831173-3831316,
3831529-3831568,3831667-3831729,3832193-3832224,
3832320-3832361,3832444-3832557
Length = 529
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Frame = +1
Query: 430 EAKSADIKVEEPAAQPEDSKTE--VQATVAEISK--EEKPIAT 546
E++S DIK + +AQP +K E VQAT++ + K EEK T
Sbjct: 394 ESQSEDIKPADSSAQPISAKKEPLVQATLSSMFKKAEEKKRCT 436
>11_06_0315 +
22318155-22318210,22319743-22319769,22319868-22319990,
22320867-22321110,22321487-22321981
Length = 314
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 406 KSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPI 540
KS + + +S D K + + +P+ SK Q ++SKE KP+
Sbjct: 160 KSWKDSKSSKESKDSKSSKESKEPKPSKDSKQLKPPKVSKESKPL 204
>08_02_1167 + 24847689-24848156
Length = 155
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +1
Query: 403 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQA 504
AK E P+AEA++A VEE AA P + E +A
Sbjct: 108 AKEPE-PEAEAEAAAAPVEEAAAAPVEVAEEAEA 140
>08_02_0937 + 22801526-22802461
Length = 311
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = +1
Query: 436 KSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATDARRFCRLSCHHSQHGE 597
+SA AA P +E AT I K++ P+A AR RL C H H E
Sbjct: 150 ESAPAAAASIAALPTVEVSE-PATACAICKDDLPLAAPAR---RLPCGHLYHSE 199
>03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 28.3 bits (60), Expect = 5.2
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Frame = +1
Query: 298 PAIPEAKK--------DDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIK 453
P IPE+K+ + +P++ DI +S +P++ + + DIK
Sbjct: 1272 PQIPESKELSQQSKILPESSPDNHDIKCEYSSPTPIPESKELSLQSKILPESSSDNQDIK 1331
Query: 454 VEEPAAQPEDSKTEVQATVAEISKEEKPIATDARRFC 564
E+P+ P EV + ++I E D R C
Sbjct: 1332 CEDPSPTPISKSKEV-SPQSKILSESYLDNQDVEREC 1367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,594,753
Number of Sequences: 37544
Number of extensions: 193529
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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