Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0816
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 34   0.081
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.00 
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)                  30   1.7  
SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)           29   2.3  
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  

>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 34.3 bits (75), Expect = 0.081
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = +1

Query: 415 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEI 519
           E P  EA+S D KVE P  + E  + EV+ATV E+
Sbjct: 22  ETPIEEAESPDKKVEAPIEEAEAPEEEVEATVEEV 56


>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 409 SSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEE 531
           ++E+P  +A ++  + E PAA+PE +  E +A V + + EE
Sbjct: 587 TAEVPIEDADTSTEEAESPAAEPEVAVKEAEAPVEDDAFEE 627



 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 427  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPI 540
            A  + A++ +EE   Q ED++  V+   A + K E P+
Sbjct: 1172 ASVEEAEVPIEEAETQAEDTEGPVEDAEASVQKAEAPV 1209


>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
          Length = 595

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = -3

Query: 548 SVAIGFSSFEISATVACTSVFESSG*AAGSSTLISADFASASGISDDF 405
           +V  G SS ++    +C+SVFE +  A  SS L  AD + +  IS ++
Sbjct: 494 AVQEGGSSSQMDVMGSCSSVFEQAMLAGESSNLSDADKSESKDISKNY 541


>SB_24455| Best HMM Match : Chromadorea_ALT (HMM E-Value=3.8)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 415 EIPDAEAKSADIKVEEPAAQPEDS-KTEVQATVAEISKEEKPIATDAR 555
           E+ DA     D +VEEPA+  ++S KT++   + +    +K I   AR
Sbjct: 73  EVDDAALDDEDEQVEEPASDTDESGKTDLNDPMIDDQDADKEIELQAR 120


>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 427  AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATD 549
            A+ ++ +   E      E ++TE  AT AE   EE  +AT+
Sbjct: 1143 AKFEATEASTEPSTTTTEPARTEATATAAEAKTEEPEVATE 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,437
Number of Sequences: 59808
Number of extensions: 230052
Number of successful extensions: 791
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)