Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0816
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    31   0.66 
U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    29   2.0  
Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   4.7  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   4.7  

>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +1

Query: 406 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPIATDARR 558
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P +++ ++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSEEKK 181


>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +1

Query: 403 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATDARRFCRLSCHH 582
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A        +    
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEAAMLAAK 80

Query: 583 SQHGEED 603
            +H EE+
Sbjct: 81  KRHEEEE 87


>Z46829-1|CAA86862.1|  375|Caenorhabditis elegans Hypothetical
           protein T14B1.1 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
 Frame = +1

Query: 418 IPDAEAKSADIKVEEPAAQP---------EDSKTEVQATV-AEISKEEKPIATDARRF 561
           +PD E    D +VEEP A+          ED ++E++    A++S EE+ +A DA  F
Sbjct: 1   MPDPEDPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNADLSSEEELVAPDAEDF 58


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 136 VSLAMPVAEEKDVVPAQPIL 195
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 136 VSLAMPVAEEKDVVPAQPIL 195
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 136 VSLAMPVAEEKDVVPAQPIL 195
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 136 VSLAMPVAEEKDVVPAQPIL 195
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,149
Number of Sequences: 27780
Number of extensions: 169226
Number of successful extensions: 559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)