Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0816
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   7.3  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 525 RRKTYCY*CQKVLPTQLPSF 584
           RRKT  Y    +LPT L SF
Sbjct: 230 RRKTLFYTVNLILPTVLISF 249


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = -2

Query: 474  LSSWFFHFNISRFC 433
            +S+W +H N+++ C
Sbjct: 1674 MSTWGYHHNVNKHC 1687


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 575 QLSRQNLLASVAIGFSSFEISATV 504
           QLS   LL +  IGFS  +I++ V
Sbjct: 302 QLSHDVLLRAKQIGFSDKQIASVV 325


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 536 GFSSFEISATVACTSVFESSG 474
           G ++  ++ TV CTS   SSG
Sbjct: 146 GGANLNLNGTVNCTSSIASSG 166


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 421 ESRMILLPGLFLRFSL 374
           ES  +LLP ++LR++L
Sbjct: 249 ESEDVLLPSVYLRWNL 264


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,000
Number of Sequences: 438
Number of extensions: 2115
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)