Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0816
(622 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26200.1 68418.m03118 mitochondrial substrate carrier family ... 32 0.35
At3g49990.1 68416.m05466 expressed protein 30 1.4
At1g62480.1 68414.m07050 vacuolar calcium-binding protein-relate... 29 1.9
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 29 1.9
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 29 3.3
At2g02170.1 68415.m00153 remorin family protein contains Pfam do... 28 5.7
At5g23750.2 68418.m02787 remorin family protein contains Pfam do... 27 7.6
At5g23750.1 68418.m02786 remorin family protein contains Pfam do... 27 7.6
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ... 27 7.6
>At5g26200.1 68418.m03118 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 342
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = -3
Query: 227 LTESSILGATSRIG*AGTTSFSSATGIAKLTAAKA 123
+T+SS+ AT R+G + TTS + A G A LT+A A
Sbjct: 112 ITKSSVGQATVRLGLSDTTSLAVANGAAGLTSAVA 146
>At3g49990.1 68416.m05466 expressed protein
Length = 502
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 418 IPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATDARRFCRL 570
+P A+ D+K E P A+P KT Q + E KE K +R R+
Sbjct: 422 LPGRRAEQTDVKAEIPKAEPIKRKTHGQESKEE-KKERKNAVKAEKREARI 471
>At1g62480.1 68414.m07050 vacuolar calcium-binding protein-related
contains weak similarity to vacuolar calcium binding
protein [Raphanus sativus] gi|9049359|dbj|BAA99394
Length = 152
Score = 29.5 bits (63), Expect = 1.9
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 EVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKV-EEPA 468
E P + E KKD+ AP ++ + K E+ + + + A + V EE
Sbjct: 73 ETPEVVEIKKDEEAPVETPVV---VEDESKTEEVVEAKKEEEVEEKKTEEAPVVVEEEKK 129
Query: 469 AQPEDSKTEVQATV-AEISKEEK 534
+ E+ K V+A+V A + K ++
Sbjct: 130 PEAEEEKPAVEASVTAPVEKADE 152
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 421 PDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIA 543
P E K + K EE + E+ KTE ++ AE +EEK A
Sbjct: 123 PVKEEKVEEKKTEETEEKKEEVKTEEKSLEAETKEEEKSAA 163
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 289 DEVPAIPEAKKDDIAPE 339
D+ +IPEAK+DD APE
Sbjct: 197 DDTASIPEAKEDDAAPE 213
>At2g02170.1 68415.m00153 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 486
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 424 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIATDARR 558
+AE K ++KVE + +D + AT+ E EEK A +A++
Sbjct: 411 EAEMKKTEVKVERIKGRAQDRLMKKLATI-ERKAEEKRAAAEAKK 454
>At5g23750.2 68418.m02787 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 201
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 424 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIA 543
+ E K V EP PE E A A+++ +EKP+A
Sbjct: 3 EEEPKKVTETVSEPTPTPE-VPVEKPAAAADVAPQEKPVA 41
>At5g23750.1 68418.m02786 remorin family protein contains Pfam
domain, PF03766: Remorin, N-terminal region; contains
Pfam domain, PF03763: Remorin, C-terminal region
Length = 202
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 424 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPIA 543
+ E K V EP PE E A A+++ +EKP+A
Sbjct: 3 EEEPKKVTETVSEPTPTPE-VPVEKPAAAADVAPQEKPVA 41
>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 586
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 391 FLRFSLQERFPVSRYRSLLGLYRPFWPLV 305
FL F E PV ++ L L RP WPL+
Sbjct: 25 FLSFPRPENTPVQLFQLLHTLERPGWPLL 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,185,627
Number of Sequences: 28952
Number of extensions: 156671
Number of successful extensions: 414
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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