Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0815
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      30   0.34 
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    28   1.4  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.1  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   4.1  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.1  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    26   5.5  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.2  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   9.5  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   9.5  
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po...    25   9.5  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 501 LVLVSHLYAVISRFCVLDQYLSYFFLSVIFN-RFVCQIYYANFSRFK 364
           + LV  + A I+   V    +++ FLS+IF   F+C I++    RFK
Sbjct: 259 MTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWFIKLQRFK 305


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 501 LVLVSHLYAVISRFCVLDQYLSYFFLSVIF 412
           + L +HL A ISRF +LD  L +F +S  F
Sbjct: 180 VALDNHL-ATISRFILLDSMLLFFIISTFF 208


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 126  SELAGVTARVSPSSLKYLASYKYW--HHIRH*PTTIWTQSQTARSLQLPL 269
            SEL G +  +  S L+Y   YK W  H       T WT     R+  LPL
Sbjct: 927  SELTGSSNYMQESDLEY--PYKRWFPHVFMDSDYTQWTHDSDIRNRMLPL 974


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -3

Query: 456  VLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVIDLYNGLEI 313
            +L QY++    S+      C++   + S    +L+++ V D+Y+ L+I
Sbjct: 2442 LLTQYVNANIPSISMETTACEVVGTSLSLLNKVLVENEVGDIYSYLKI 2489


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 161 IIFKISRVL*ILASYSTLTYNNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRSI 340
           ++ K S+V   LA   ++  +     T   +  ++PLL   + SYR  +     PL RS+
Sbjct: 4   LLTKSSQVFDFLADRLSVRKSRRFWETQENLESSTPLLQEPQQSYRSNSFNELPPLSRSV 63

Query: 341 T 343
           T
Sbjct: 64  T 64


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = -3

Query: 501 LVLVSHLYAVISRFCVLDQYLSYFFLSVIFNRFVCQIYYANFSRFKLILIKSYVID 334
           L+  S++   IS  C+LD +       ++FN+ + ++   +  RFK   IK  V+D
Sbjct: 53  LIPASYVEQQISA-CLLDVHCEVMKTGMLFNQQILKVIVESIDRFK---IKKVVVD 104


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 212 LTYNNLDTITNSAITPASPLLNSIKYSYRRKNSEISKPLYRS 337
           ++Y N+   T + + P S  L  IKYS      E+ + LY+S
Sbjct: 600 MSYFNIVKRTLADMVPKSISLKMIKYSKEHIQHELLEQLYKS 641


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 562  FSGDTSGNTAERAASFIVRWLGASFAFIRGYISLLCLGPIS*LLFLIGNIQ--SLCVSNI 389
            F   T   +AE   +F   WL   F  +  YI L   G I+  +      Q  SLC+ N+
Sbjct: 1104 FEQCTKEVSAEDVTNF---WLELVFTLLLVYIKLSLKGSINSQITFKDFQQELSLCIENL 1160

Query: 388  LCEFLS 371
            L  FLS
Sbjct: 1161 LDSFLS 1166


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 175 ISRLINIGIIFDTNLQQFGHNHKQRDHSSFPFIEFHQIL 291
           +S + + GI+FD  +  +     ++  + FPF+E   +L
Sbjct: 233 VSSIEDHGIVFDIGINNYTGFLSKKHINDFPFVEGQSLL 271


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 546 AATLLSVPLRLSYGGLVLVSHLYAVISRFCVLDQYLSYFFLSVIFN 409
           A  LLS     S    +LV H+  V+ +F + +++L     +++ N
Sbjct: 725 AIILLSATFLYSLIAEILVEHVDTVLDKFAISEKFLGLTLFALVPN 770


>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 399

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 521 SGTLSSVAARVSTKRHTKATES*QPSPWWCQPALVAPN 634
           SGT  S+    +T R  K     + + WW + A  +PN
Sbjct: 303 SGTSHSLDLHGATVREAKTIVRERVAAWWAKEADTSPN 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,579,583
Number of Sequences: 5004
Number of extensions: 51753
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)