Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0815
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777 33 0.26
05_06_0258 + 26730904-26731239 30 1.4
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 29 2.4
01_06_0409 + 29142409-29142870 29 3.2
01_05_0627 + 23802235-23802853,23803357-23803430,23804207-238043... 29 3.2
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029... 28 5.6
10_08_0618 + 19307658-19308584,19308690-19309082 28 7.5
07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123 27 9.9
06_03_1078 + 27418886-27419215 27 9.9
04_04_0058 - 22416949-22418196 27 9.9
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 27 9.9
>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
Length = 778
Score = 32.7 bits (71), Expect = 0.26
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 548 RVSTKRHTKATES*QPSPWWCQPALVAPNG 637
RV ++ H P PWWC+P+ V+ +G
Sbjct: 577 RVHSRSHNDQASVPSPMPWWCRPSSVSRDG 606
>05_06_0258 + 26730904-26731239
Length = 111
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = -2
Query: 652 GEYRPAVGRDQRWLAPPR*RLLAFCSFCMAFSGDTSGNTAERAASFIV 509
G YR A GR Q L PP R+ A C FC F G G + A+ V
Sbjct: 53 GGYR-AAGRVQPALDPPSPRV-AVCGFCRFFGGSGKGGRSGGGAAAAV 98
>03_06_0353 -
33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 443 YWSKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QPS 598
Y SKT++ + K ETS KPP D S + + + T+ K+ E+ P+
Sbjct: 467 YPSKTEEMERLGLKSETSKKPPLD--SSKVKESSKKGYTREKRKSEENGSPT 516
>01_06_0409 + 29142409-29142870
Length = 153
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 528 RSAVLPLVSPLNAIQKLQKANSLHLGGASQRWSRP 632
RSA L + + A+ + Q A + G S+RWSRP
Sbjct: 15 RSAPLGRIWRVEAVGRRQLATTTTTAGGSRRWSRP 49
>01_05_0627 +
23802235-23802853,23803357-23803430,23804207-23804364,
23804640-23804964
Length = 391
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +2
Query: 458 QKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKA---TES*QPSPWWCQPALVA 628
Q+ D+ + E K+ G +S A H K+ T S +P+PWW + + A
Sbjct: 26 QEEDVLGREKEGKDGERKKKKKGRRTSTACSAERLSHVKSSTRTSSSRPAPWWRRSRMAA 85
>04_03_0389 -
15302079-15302120,15302545-15302634,15302718-15302983,
15303196-15303883
Length = 361
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 135 AGVTARVSPSSLKYLASYKYWHHIRH*PTTIWTQSQTA 248
AG+ +V S + +S + WH P + TQSQ+A
Sbjct: 289 AGLRPKVKTSRIPGASSTEEWHESEQEPAEVLTQSQSA 326
>10_08_0618 + 19307658-19308584,19308690-19309082
Length = 439
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 166 DDGETRAVTPANSDWVVYCITHLFL*GRASVISL-L*NG*INMYDL*NRKKKK 11
D+ + RA+ A DW+VY T + + S I+ L G I M R++K+
Sbjct: 204 DEADVRAIATAQHDWIVYFATKMRVFAFCSTITKHLFRGRIKMALALRRRQKE 256
>07_03_1611 - 28136398-28136572,28137995-28138567,28138762-28139123
Length = 369
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/31 (32%), Positives = 22/31 (70%)
Frame = +3
Query: 117 TTQSELAGVTARVSPSSLKYLASYKYWHHIR 209
T+ +++A + ++++ +SL LAS+ WH +R
Sbjct: 74 TSPADVAWLKSQLASNSLPLLASHDAWHRLR 104
>06_03_1078 + 27418886-27419215
Length = 109
Score = 27.5 bits (58), Expect = 9.9
Identities = 17/50 (34%), Positives = 20/50 (40%)
Frame = +2
Query: 491 TSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QPSPWWCQPALVAPNGG 640
TS + RS S A R RH + WW QP +VA GG
Sbjct: 21 TSAASSWSSRSNRAPSGAFRPPDPRHPGRIWT--GGGWWRQPVMVAAGGG 68
>04_04_0058 - 22416949-22418196
Length = 415
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 593 PSPWWCQPALVAPNGGPV 646
P+PW C PA AP+ P+
Sbjct: 43 PAPWACPPAFPAPSPSPL 60
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 389 YI*HTKRLNITDKKK*LRYWSKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTK 562
+I K ++ TD+ L+ + +KR I+ + +TKP D + +SS A T+
Sbjct: 209 HIIRDKNISPTDRAPGLKSFYACKKRKISKEATDNATKPKEDPETTRVSSKVAHDDTQ 266
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,245,179
Number of Sequences: 37544
Number of extensions: 309663
Number of successful extensions: 769
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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