Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0815
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_25401| Best HMM Match : DUF669 (HMM E-Value=3.2)                    29   3.3  
SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 25/82 (30%), Positives = 37/82 (45%)
 Frame = -3

Query: 579 VAFVWRLVETRAATLLSVPLRLSYGGLVLVSHLYAVISRFCVLDQYLSYFFLSVIFNRFV 400
           V F+  LV    ATL+  P  L+  G V  S L+ V    C    +LSYFF+ +      
Sbjct: 231 VGFMLGLVPFCGATLVMFPPNLAVHGHVTGSILHIVEEEKCTHSFFLSYFFVDM---TLY 287

Query: 399 CQIYYANFSRFKLILIKSYVID 334
            +I   + SR +  L    ++D
Sbjct: 288 SEISNVDLSRLRFCLTGGQLMD 309


>SB_19128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 413 NITDKKK*LRYWSKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVST 559
           N TD    L+ +++T    + A  C T+T P   +R+ +  +V  R+ T
Sbjct: 80  NFTDTDYALKLYNQTSLESMRAPSCPTTTSPAKRRRTPSCPAVETRIRT 128


>SB_25401| Best HMM Match : DUF669 (HMM E-Value=3.2)
          Length = 226

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 449 SKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QPSPWWCQPALVA 628
           + T+K D + YK  +S KPP      TL++++ + S      +     P   W  P  V 
Sbjct: 32  TSTRKSDHSTYKTSSSFKPPASPVL-TLTTLSRQPSVSEDVDSNLPSPPPSVWKVPEYVE 90

Query: 629 PNGGP 643
           P   P
Sbjct: 91  PKWNP 95


>SB_10426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
 Frame = +2

Query: 407 RLNITDKKK*LRYWSKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKATES 586
           R+ +  K +  +Y  K Q+R +T+ +   ++    D+ +G ++ +  + +   H++   +
Sbjct: 110 RIQVWFKNRRAKY-RKDQRRSLTSEREHLASIQKQDEAAGLMAPMYYQQAHMSHSRPYWN 168

Query: 587 *Q-PSPWWCQPALVAPN 634
              PS W   P ++ PN
Sbjct: 169 HNVPSDWLADPPIITPN 185


>SB_26487| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +3

Query: 513 INEAARSAVLPLVSPL---NAIQKLQKANSL 596
           +NE   S++LPLV+PL   + +Q  + ANSL
Sbjct: 253 VNEQIESSLLPLVTPLAQESRVQDYRSANSL 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,044,391
Number of Sequences: 59808
Number of extensions: 368029
Number of successful extensions: 820
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)