Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0815
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned expre...    30   1.6  
U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned expre...    30   1.6  
U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned expre...    30   1.6  
AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    27   8.8  
AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain sp...    27   8.8  

>U29379-7|ABC71826.1|  710|Caenorhabditis elegans Patterned
           expression site protein22, isoform c protein.
          Length = 710

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 STLTYNNLDTITNSAITPASPLLNSIKYSY 295
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>U29379-6|AAF99981.3|  677|Caenorhabditis elegans Patterned
           expression site protein22, isoform a protein.
          Length = 677

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 STLTYNNLDTITNSAITPASPLLNSIKYSY 295
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 521 SALTINNLSLIVSGLLTLACPLLTSIAGQY 550


>U29379-5|ABC71825.1|  777|Caenorhabditis elegans Patterned
           expression site protein22, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 STLTYNNLDTITNSAITPASPLLNSIKYSY 295
           S LT NNL  I +  +T A PLL SI   Y
Sbjct: 576 SALTINNLSLIVSGLLTLACPLLTSIAGQY 605


>AF068714-1|AAC17808.1|  254|Caenorhabditis elegans Hypothetical
           protein B0348.5 protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 449 SKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKAT 580
           +K  K+  T     TST+ P   R  T  +VAA  S+  +T  T
Sbjct: 197 AKANKKTTTGSPSTTSTRKPRKARKPTKKTVAAAPSSSSNTSTT 240


>Z81570-7|CAB04608.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 491 TSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QP 595
           TS KPP  K  G L ++   + TKR   + +  QP
Sbjct: 347 TSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQP 381


>Z75956-5|CAB00130.2| 4063|Caenorhabditis elegans Hypothetical
           protein R31.1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 491 TSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QP 595
           TS KPP  K  G L ++   + TKR   + +  QP
Sbjct: 347 TSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQP 381


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 474 PRINAKLAPSHRTINEAARSAVLPLVSPLNAIQKLQKANSLHLG 605
           PRIN +   S   +   +  A+  + +PLN+  KLQ+ +++  G
Sbjct: 260 PRINVQEPTSSSNLPSRSHIALNLMKNPLNSFNKLQRQSTIPAG 303


>AF053496-1|AAC08577.1| 4063|Caenorhabditis elegans beta chain
           spectrin homolog Sma1 protein.
          Length = 4063

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 491 TSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QP 595
           TS KPP  K  G L ++   + TKR   + +  QP
Sbjct: 347 TSEKPPKYKEKGELEALFFTIQTKRKAMSRKQYQP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,104,821
Number of Sequences: 27780
Number of extensions: 280111
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)