Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0815
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62020.1 68418.m07785 heat shock factor protein, putative (HS...    29   2.7  
At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8) ide...    29   3.6  
At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar t...    28   6.2  

>At5g62020.1 68418.m07785 heat shock factor protein, putative (HSF6)
           / heat shock transcription factor, putative (HTSF6)
           identical to heat shock transcription factor 6 (HSF6)
           SP: Q9SCW4 from [Arabidopsis thaliana] ;contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 299

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/67 (25%), Positives = 27/67 (40%)
 Frame = +2

Query: 440 RYWSKTQKRDITAYKCETSTKPPYDKRSGTLSSVAARVSTKRHTKATES*QPSPWWCQPA 619
           R   + Q+R IT    +T   P  ++R+ T+    +      +     S  PS W+C   
Sbjct: 105 RLLREIQRRKITTTH-QTVVAPSSEQRNQTMVVSPSNSGEDNNNNQVMSSSPSSWYCHQT 163

Query: 620 LVAPNGG 640
               NGG
Sbjct: 164 KTTGNGG 170


>At5g66390.1 68418.m08372 peroxidase 72 (PER72) (P72) (PRXR8)
           identical to SP|Q9FJZ9 Peroxidase 72 precursor (EC
           1.11.1.7) (Atperox P72) (PRXR8) (ATP6a) {Arabidopsis
           thaliana}
          Length = 336

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -3

Query: 204 YDANIYKTRDILKMMVKLALSHQPTQTGSFIVLHIY--FYKG 85
           YD +  K ++I++ +V  A  H P    S + LH +  F KG
Sbjct: 38  YDQSCPKAQEIVQSIVAKAFEHDPRMPASLLRLHFHDCFVKG 79


>At5g21105.1 68418.m02515 L-ascorbate oxidase, putative similar to
           L-ascorbate oxidase from {Nicotiana tabacum} SP|Q40588,
           {Cucurbita pepo var. melopepo} SP|P37064; contains Pfam
           profile PF00394: Multicopper oxidase; supported by cDNA
           gi_15215753_gb_AY050406.1_; A false intron was added
           between exons 4 and 5 to circumvent the single
           nucleotide insertion in this BAC which, otherwise,
           causes a frameshift.
          Length = 571

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 245 SAITPASPLLNSIKYSYRRKNSEISKPLYRSIT*DLIN 358
           S +TPA+P L S+KY+ +   +  S P    +  D++N
Sbjct: 387 SLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMN 424


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,159,165
Number of Sequences: 28952
Number of extensions: 255265
Number of successful extensions: 575
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)