Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0812
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579...    29   4.9  
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271...    28   6.5  
02_01_0112 - 839048-839552,839638-839720,839828-839982,840078-84...    28   8.6  

>04_04_0944 -
           29557360-29557485,29557570-29557698,29557875-29557917,
           29558321-29558400,29558493-29558804
          Length = 229

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 270 WVISLLRTSRRGQLFYLLALLEPDLPFP 353
           W+ + L + +R  LFY  A L P L FP
Sbjct: 106 WIFAWLDSGKRRYLFYAAAYLAPYLSFP 133


>05_01_0347 -
           2717275-2717613,2717994-2718077,2718185-2718247,
           2718350-2718488,2719118-2719219,2719324-2719424,
           2719915-2719981,2720074-2720120,2720246-2720440,
           2720523-2720569,2721242-2721339,2722219-2722337,
           2722438-2722611
          Length = 524

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 305 TVILFVGAIGTGSAFSLASTTIGALF 382
           T+ILF GA+GT  +F + S  IGA+F
Sbjct: 112 TIILF-GAVGTLISFVIISLAIGAIF 136


>02_01_0112 -
           839048-839552,839638-839720,839828-839982,840078-840557,
           840855-841097,841189-841403,841489-841756,842477-842525
          Length = 665

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 508 LLKFLTTNVQTHLDPYDIDQ---DY*VLLISLKYTAMLSK 398
           + + L TN  THL   D DQ   +Y + LI  KY+  +SK
Sbjct: 245 VFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISK 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,670,153
Number of Sequences: 37544
Number of extensions: 288880
Number of successful extensions: 562
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)