Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0812
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)                 30   2.2  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_14206| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-12)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 465 GSKCVCTLVVKNFSRYVYLLDENKTIF*ITLD-ILVLCLDDIFVALIVTHYIYRFIYFYW 641
           G  CV  LV  +F  +V       TI  I +D  L L L   + ALI T  +YR +  YW
Sbjct: 101 GVYCVARLVAVSFG-WVCAGVSLMTISSIIVDRYLALLLHMRYNALITTSKVYRLVLVYW 159

Query: 642 V 644
           +
Sbjct: 160 I 160


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 166 RLWDFLRSQEYFFGFLSTNKELFTNLFH 249
           RLWD  R+  Y+  F++ N  +FT  +H
Sbjct: 403 RLWDMRRTDTYYHQFMAHNGPVFTLDWH 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,068,676
Number of Sequences: 59808
Number of extensions: 363816
Number of successful extensions: 685
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)