Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0807
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces ...    71   9e-14
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   4.4  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    25   5.8  

>SPBC26H8.14c |cox17||metallochaperone Cox17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 70

 Score = 71.3 bits (167), Expect = 9e-14
 Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 3/73 (4%)
 Frame = +1

Query: 70  MGNASAKAVEVKVLEGPAP-ENVEKPKLKPCCACPETKRARDACIIE--NGEENCGPLIE 240
           M +++  +   KV E PAP  + EKPK  PCCACPETK+ARDAC+++  NG   C  LIE
Sbjct: 1   MSSSTEPSTATKVSE-PAPIASEEKPK--PCCACPETKQARDACMLQSSNGPIECAKLIE 57

Query: 241 EHKACMRKMGFNI 279
            HK CM + G+ +
Sbjct: 58  AHKKCMAQYGYEV 70


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 395 IINLFFFFHIGTDLLTNKQCCRRYFVANNTLIEN 294
           I +L   F +G D+LT + C R   +ANN  + N
Sbjct: 570 IPSLHHAFFVG-DILTKRDCLRLQVLANNVNVVN 602


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 219 LFSIFYNACIACSFCFRASTARL*FRFL 136
           LF   Y + + CS C++ STA   F +L
Sbjct: 431 LFQGMYKSTLECSICYQKSTAFDPFMYL 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,871
Number of Sequences: 5004
Number of extensions: 39399
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)