Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0807
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,322...    29   3.4  
07_02_0006 - 11663297-11663308,11663587-11663783,11663860-116639...    27   7.7  

>05_01_0003 + 29476-29847,30192-31519,31612-31722,31836-32112,
            32233-33714
          Length = 1189

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 336  LS*VLCS**YFD*KFSMTLNI-ESHFSHTGLVFFNKWSTVLFSIFYNA 196
            +S ++C   Y +  F +TL + E++ S +G  F+N W+   +++F+ +
Sbjct: 904  ISAMICYFFYKNITFGVTLFLYEAYTSFSGQTFYNDWALSTYNVFFTS 951


>07_02_0006 -
           11663297-11663308,11663587-11663783,11663860-11663948,
           11664087-11664166,11664747-11664851,11664951-11665031,
           11665135-11665218,11665352-11665449,11666203-11666297,
           11666380-11666453,11666549-11666826,11666920-11667190
          Length = 487

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 326 TYDSIAYLSANQFQYEKKKTDL*STYVVNKVGVANSNIQFCLLLTILMGSTLINL 490
           +YDSI  L+ N  ++E++   + S+Y + ++   N  I     L  L G  L+ L
Sbjct: 249 SYDSIQELNRNIEKHERRHDLVISSYALGEIPSLNDRITIVRQLWDLTGDVLVLL 303


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,230,205
Number of Sequences: 37544
Number of extensions: 211359
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)